Job Description P29745 Confidence 100.00% Date Thu Jan 5 11:45:41 GMT 2012 Rank 26 Aligned Residues 329 % Identity 15% Template c3ct9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution Resolution 2.31 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	L	E	R	F	L	N	Y	V	S	L	D	T	Q	S	K	A	G	V	R	Q	V	P	S	T	E	G	Q	W	K	L	L	H	L	L	K	E	Q	L	E	E	M	G	L	I	N	V	T	L	S	E	K	G	T	L	M	A	T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.																					.	.	.														.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																					.	.	.														.	.
Template Sequence		A	E	A	V	S	L	L	K	S	L	I	S	I	P	S	I	S	R	.	.	.	.	.	.	.	.	.	.	E	E	T	Q	A	A	D	F	L	Q	N	Y	I	E	A	E	G	X	Q	T	.	.	.	G	R	K	G	N	N	V	W	C	L	S	P	X	.	.	F	D	K	P	T	I	L	L	N	S	H	I	D	T
Template Known Secondary structure														S			B	T	T	.	.	.	.	.	.	.	.	.	.															T	T	T				.	.	.				T	T							T	T	.	.														B
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																					.	.	.														.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.											.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L	H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L	L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I	P
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.																					.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.																					.
Template Sequence		V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	K	D	P	F	T	P	R	E	E	N	G	K	L	Y	G	L	G	S	N	.	.	.	.	D	A	G	A	S	V	V	S	L	L	Q	V	F	L	Q	L	C	R	T	S	.	Q
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S						T	T					T	T	T	T	.	.	.	.	T	T															T	T	S		.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.																					.
Template SS confidence
		77	.																																.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120
		162	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		H	G	D	I	R	V	A	F	T	P	D	E	E	.	.	V	G	K	G	A	K	H	F	D	V	D	A	F	D	A	R	W	A	Y	T	V	D	G	G	G	V	G	E	L	E	F	E	N	F	N	A	A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V	M	V	N	A	L	S	L	A	A
Query Conservation															.	.
Alig confidence															.	.																											.																									.	.
Template Conservation																																											.																									.	.
Template Sequence		N	Y	N	L	I	Y	L	A	S	C	E	E	E	V	S	G	K	E	G	I	E	S	V	L	P	G	L	P	P	V	S	F	A	I	V	G	E	P	T	E	X	.	Q	P	A	I	A	E	K	G	L	X	V	L	D	V	T	A	T	G	K	A	G	H	A	A	.	.	R	D	E	G	D	N	A	I	Y	K	V	L
Template Known Secondary structure		S	S										T	T	T	T		T	T	S	G	G	G	T	T	T	T	S				S								S	T	T	.																			B			B	T	T	.	.	S	S			B		T	T	G	G	G
Template Predicted Secondary structure																																											.																									.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.
		240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure														.	.	.	.	.	.															.
Query SS confidence														.	.	.	.	.	.															.
Query Sequence		R	I	H	A	E	V	P	A	D	E	S	P	.	.	.	.	.	.	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	.	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R	K	R	K	M	M	E	I	A	K	K	V	G	K	G	L	H	P	D	C	Y	I	E
Query Conservation														.	.	.	.	.	.															.
Alig confidence														.	.	.	.	.	.															.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	I	A	W	F	R	D	Y	R	F	E	K	E	S	P	L	L	G	P	V	K	X	S	V	T	V	I	N	A	G	T	Q	H	N	V	V	P	D	K	C	T	F	V	V	D	I	R	S	N	E	L	Y	S	N	E	D	L	F	A	E	I	R	K	H	I	A	C	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S			B	T	T	T	B	S												S	S	T	T	B															T	T												T	T			S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		L	V	I	E	D	S	Y	Y	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	P	E	L	K	P	I	R	G	G	T	D	G	A	Q	L	S	F	M	G	L	P	C	P	N	L	F	T	G	G	.	Y	N	Y	H	G	K	H	E	F	V	T	L	E	G	M	E
Query Conservation																																																																	.
Alig confidence																																.	.	.	.	.	.	.	.	.																									.
Template Conservation																																.	.	.	.	.	.	.	.	.
Template Sequence		D	A	K	A	R	S	F	R	L	N	S	S	R	I	D	E	K	H	P	F	V	Q	K	A	V	K	X	G	R	I	.	.	.	.	.	.	.	.	.	P	F	G	S	P	T	L	S	D	Q	A	L	X	S	F	A	S	V	K	I	G	P	G	R	S	S	R	S	H	T	A	E	E	Y	I	X	L	K	E	I	E
Template Known Secondary structure						S		S									T	T	S									T	T			.	.	.	.	.	.	.	.	.						S			G	G	G	G			S							S	S		G	G	G	T	T	S	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.										300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		392	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	Q	V	I	V	R	I	A	E	L	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I	G	I	Y	L	D	L	L	D	G	L	K
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions