Return to main results Retrieve Phyre Job Id

Job DescriptionP29745
Confidence100.00%DateThu Jan 5 11:45:41 GMT 2012
Rank18Aligned Residues341
% Identity14%Templatec2rb7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  DKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDT
Query Conservation      
 
  

 
 
 
            
      
   
   
      
    
 
   
        
 
  
 

Alig confidence 




















.......



































..













Template Conservation     
 

  

 


 
    .......     
  
   
   
                   ..     


 

 

Template Sequence  QHIVELTSDLIRFPSXHSRPE. . . . . . . QISRCAGFIXDWCAQNGIHAERXDHDGIPSVXVLPE. . KGRAGLLLXAHIDV
Template Known Secondary structure  TS


TT
.......TT


TT
SB..TT


Template Predicted Secondary structure 








.......







..








Template SS confidence 















































































   5....10.........20..... ....30.........40.........50.........60. ........70.....
 
   82.......90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 














































....
Query SS confidence 











































































. . . .
Query Sequence  SPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQ. . . .
Query Conservation 

        
       
                            
 


      
 
 
    
 
   
  ....
Alig confidence 

...............................




















....

















....
Template Conservation 

...............................    
         
 


  ....
 
                   
Template Sequence  VD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AEDDLFVPRVENDRLYGRGAN. . . . DDKYAVALGLVXFRDRLNALKA
Template Known Secondary structure 

...............................

GGGGS
TTSTTTT....TT
Template Predicted Secondary structure 

...............................










....




Template SS confidence 















































































   76. ..80.........90........ .100.........110.........120
 
   158.160.........170.... .....180.........190.........200.........210.........220.........230....
Predicted Secondary structure  ..










.





























Query SS confidence  . .
















.



























































Query Sequence  . . KKIPHGDIRVAFTPDEE. VGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNA
Query Conservation  ..               

.   
                              
     
            
  
 

Alig confidence  ..
















.
















































.









Template Conservation           
       

 
                           
  
  
     
 
 
   
.        

Template Sequence  AGRSQKDXALGLLITGDEEIGGXNGAAKALPLIRADYVVALDGGNPQQVITKEKGIIDIKLTCTGKAAH. GARPWXGVNA
Template Known Secondary structure  TT

GGG

S
GGGTSTTTGGG

SSSBTT

B
.TTSGGGSB
Template Predicted Secondary structure 


































.






Template SS confidence 















































































   121........130.........140.........150.........160.........170.........180......... 190.........
 
   235....240.........250..... ....260.........270.........280.........290.........300........
Predicted Secondary structure 






......










Query SS confidence 




















. . . . . .




















































Query Sequence  LSLAARIHAEVPADESPEMTE. . . . . . GYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPD
Query Conservation      
     
          ......        
    

  
     

             
              
Alig confidence 




















......












































........
Template Conservation         
  
                    
 

   
 

         
             
      ........
Template Sequence  VDLLXEDYTRLKTLFAEENEDHWHRTVNLGRIRAGESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG. . . . . . . .
Template Known Secondary structure  TTS



TT

S

S
TT
S
TTS

SS........
Template Predicted Secondary structure 

















........
Template SS confidence 















































































   200.........210.........220.........230.........240.........250.........260.........270.
 
   309310.........320.........330.........340.........350.........360.........370.... .....380.......
Predicted Secondary structure 



























.









Query SS confidence 

































































.












Query Sequence  CYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTG. GYNYHGKHEFVTL
Query Conservation    
                        
       
         




      


 
  
 
.    
   
 
 
Alig confidence  ......



























.....


























.












Template Conservation  ......                            .....         
       


 
  


     
   
 
 
Template Sequence  . . . . . . TVSIVRTVPVFLAADSPYTERLLALSGA. . . . . TAGKAHGASDARYLGENGLTGVVWGAEGFNTLHSRDECLHI
Template Known Secondary structure  ......







.....SS

GGGGTGGGT






TT
TTSTT
T
Template Predicted Secondary structure  ......









.....























Template SS confidence 















































































   272.......280.........290......... 300.........310.........320.........330.........340
 
   388.390.........400......
Predicted Secondary structure 
Query SS confidence 


















Query Sequence  EGMEKAVQVIVRIAELTAQ
Query Conservation              

     
Alig confidence 


















Template Conservation    
     
   

     
Template Sequence  PSLQSIYDPLXQLAREXEE
Template Known Secondary structure  T
Template Predicted Secondary structure 

Template SS confidence 


















   341........350.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions