Phyre 2 alignment of P29745 with c2q43A

Job Description P29745
Confidence 100.00% Date Thu Jan 5 11:45:41 GMT 2012

Rank 27 Aligned Residues 350

% Identity 14% Template c2q43A_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:iaa-amino acid hydrolase ilr1-like 2; PDBTitle: ensemble refinement of the protein crystal structure of iaa-aminoacid2 hydrolase from arabidopsis thaliana gene at5g56660

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	K	L	L	E	R	F	L	N	Y	V	S	L	D	T	Q	S	K	A	G	V	R	Q	V	P	S	T	E	G	Q	W	K	L	L	H	L	L	K	E	Q	L	E	E	M	G	L	I	N	V	T	L	S	E	K	G	T	L	M	A	T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Sequence	D	W	M	V	K	I	R	R	K	I	H	E	N	P	E	L	G	Y	.	.	.	.	.	.	.	.	.	.	E	E	L	E	T	S	K	L	I	R	S	E	L	E	L	I	G	I	K	Y	R	Y	P	V	A	I	T	G	V	I	G	Y	I	G	T	.	.	.	G	E	P	P	F	V	A	L	R	A	D	M	D	A
Template Known Secondary structure													S				T	T	.	.	.	.	.	.	.	.	.	.																	T								T	T	T								S	.	.	.	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template SS confidence
	28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L	H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L	L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I	P
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.									.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.									.	.	.	.	.	.	.
Template Sequence	L	P	I	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	W	E	H	K	S	K	I	.	A	G	K	M	H	A	C	G	.	.	.	.	.	.	.	H	D	G	H	V	T	M	L	L	G	A	A	K	I	L	H	E	H	R	H	H
Template Known Secondary structure	B	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T	S		S	S	.	T	T		B		T	T	S	.	.	.	.	.	.	.																		T	G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.									.	.	.	.	.	.	.
Template SS confidence
	95	.	.	.	.																													100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	H	G	D	I	R	V	A	F	T	P	D	E	E	V	G	K	G	A	K	H	F	D	V	D	A	F	D	A	R	W	A	Y	T	V	D	G	G	G	V	G	E	L	E	F	E	N	F	N	A	A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V	M	V	N	A	L	S	L	A	A	R
Query Conservation	.
Alig confidence	.																																																															.
Template Conservation																																																																.
Template Sequence	L	Q	G	T	V	V	L	I	F	Q	P	A	E	E	G	L	S	G	A	K	K	M	R	E	E	G	A	L	K	N	V	E	A	I	F	G	I	H	L	S	A	R	I	P	F	G	K	A	A	S	R	A	G	S	F	L	A	G	A	G	V	F	E	.	A	V	I	T	G	K	T	I	D	P	V	V	A	A	S	S
Template Known Secondary structure		S	S										T	T	T	T									T	T	T	T	T	T															T	T						S							B					.
Template Predicted Secondary structure																																																																.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence	I	H	A	E	V	P	A	D	E	S	P	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R	K	R	K	M	M	E	I	A	K	K	V	G	K	G	L	H	P	D	C	Y	I	E	L	V	I	E	D	S	Y	Y
Query Conservation
Alig confidence																									.	.																																.	.	.	.
Template Conservation																									.	.																																.	.	.	.
Template Sequence	I	V	L	S	L	Q	Q	L	V	S	R	E	T	D	P	L	D	S	K	V	V	T	V	S	.	.	K	V	N	P	D	S	I	T	I	G	G	T	L	R	A	F	T	G	F	T	Q	L	Q	Q	R	V	K	E	V	I	T	.	.	.	.	K	Q	A	A	V	H	R	C	N	A	S	V	N	L	T	P	N	G	R
Template Known Secondary structure										B			S	S	T	T	S								.	.																S	S															.	.	.	.					T	T	T							S	S	G	G	G
Template Predicted Secondary structure																									.	.																																.	.	.	.
Template SS confidence
	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.								.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																											.	.	.																																	.	.	.	.	.	.	.
Query SS confidence																											.	.	.																																	.	.	.	.	.	.	.
Query Sequence	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	.	.	.	P	E	L	K	P	I	R	G	G	T	D	G	A	Q	L	S	F	M	G	L	P	C	P	N	L	F	T	G	G	Y	N	Y	.	.	.	.	.	.	.	H	G	K	H	E	F	V	T	L	E	G	M
Query Conservation																											.	.	.																																	.	.	.	.	.	.	.
Alig confidence																											.	.	.																			.														.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence	E	P	M	P	P	T	V	N	N	K	D	L	Y	K	Q	F	K	K	V	V	R	D	L	L	G	Q	E	A	F	V	E	A	A	P	V	M	G	S	E	D	F	S	Y	F	A	E	T	.	I	P	G	H	F	S	L	L	G	M	Q	D	E	T	N	G	Y	A	S	S	H	S	P	L	Y	R	I	N	E	D	V	L
Template Known Secondary structure			B																					T		T	T	T							B					T	T					T	T	.	T	T											T	T			S			S	S	S	T	T					G	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

	391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	K	A	V	Q	V	I	V	R	I	A	E	L	T	A	Q	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	P	Y	G	A	A	I	H	A	S	M	A	V	Q	Y	L	K	E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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