Job Description P29745 Confidence 100.00% Date Thu Jan 5 11:45:41 GMT 2012 Rank 25 Aligned Residues 343 % Identity 15% Template c1ysjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		D	K	L	L	E	R	F	L	N	Y	V	S	L	D	T	Q	S	K	A	G	V	R	Q	V	P	S	T	E	G	Q	W	K	L	L	H	L	L	K	E	Q	L	E	E	M	G	L	I	N	V	T	L	S	E	K	G	.	T	L	M	A	T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D
Query Conservation																																																									.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																												.													.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence		T	R	L	I	N	X	R	R	D	L	H	E	H	P	E	L	S	F	.	.	.	.	.	.	.	.	.	.	Q	E	V	E	T	T	K	K	I	R	R	W	L	E	E	E	Q	I	E	I	L	D	V	P	Q	L	K	T	G	V	I	A	E	I	K	G	R	E	D	G	.	.	P	V	I	A	I	R	A	D	I	D
Template Known Secondary structure														S				T	T	.	.	.	.	.	.	.	.	.	.															T	T	T							T	T		S	S									S				.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L	H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L	L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.
Template Sequence		A	L	P	I	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	N	L	P	F	A	S	.	K	V	D	G	T	X	H	A	C	G	.	.	.	.	.	.	.	H	D	F	H	T	A	S	I	I	G	T	A	X	L	L	N	Q	R	R	A
Template Known Secondary structure			B	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S			T	T			.	S	S	T	T		B		T	T		.	.	.	.	.	.	.																T	T		T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.																													.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		161		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		P	.	H	G	D	I	R	V	A	F	T	P	D	E	E	V	G	K	G	A	K	H	F	D	V	D	A	F	D	A	R	W	A	Y	T	V	D	G	G	G	V	G	E	L	E	F	E	N	F	N	A	A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V	M	V	N	A	L	S	L	A	A
Query Conservation			.
Alig confidence			.																																																	.	.
Template Conservation																																																				.	.
Template Sequence		E	L	K	G	T	V	R	F	I	F	Q	P	A	E	E	I	A	A	G	A	R	K	V	L	E	A	G	V	L	N	G	V	S	A	I	F	G	X	H	N	K	P	D	L	P	V	G	T	I	G	.	.	V	K	E	G	P	L	X	A	S	V	D	R	F	E	I	V	I	K	G	K	I	D	P	I	A	A	A	G
Template Known Secondary structure		T											S		T	T	T	T									T	T	T	T	T	T											T	T	S		T	T				.	.			S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	A	E	V	P	A	D	E	S	P	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R	K	R	K	M	M	E	I	A	K	K	V	G	K	G	L	H	P	D	C	Y	I	E	L	V	I	E	D	S	Y
Query Conservation
Alig confidence								.	.	.	.	.																																																																				.	.
Template Conservation								.	.	.	.	.																																																																				.	.
Template Sequence		Q	I	I	S	G	L	.	.	.	.	.	Q	N	A	V	V	S	I	T	R	V	Q	A	G	T	S	W	N	V	I	P	D	Q	A	E	X	E	G	T	V	R	T	F	Q	K	E	A	R	Q	A	V	P	E	H	X	R	R	V	A	E	G	I	A	A	G	Y	G	A	Q	A	E	F	K	W	F	P	Y	L	.	.
Template Known Secondary structure						T	T	.	.	.	.	.														S	S	S	S	S			S											S	S																						T	T												.	.
Template Predicted Secondary structure								.	.	.	.	.																																																																				.	.
Template SS confidence
		208	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																														.																									.	.				.
Query SS confidence																														.																									.	.				.
Query Sequence		Y	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	P	.	E	L	K	P	I	R	G	G	T	D	G	A	Q	L	S	F	M	G	L	P	C	P	N	L	.	.	F	T	G	.	G	Y	N	Y	H	G	K	H	E	F	V	T	L	E	G	M	E	K	A	V	Q
Query Conservation																														.																									.	.				.
Alig confidence		.	.	.	.																									.															.										.	.				.
Template Conservation		.	.	.	.																																								.
Template Sequence		.	.	.	.	P	S	V	Q	N	D	G	T	F	L	N	A	A	S	E	A	A	A	R	L	G	Y	Q	T	V	H	A	E	Q	S	P	G	G	E	D	F	A	L	Y	.	Q	E	K	I	P	G	F	F	V	W	X	G	T	N	G	T	E	E	W	H	H	P	A	F	T	L	D	E	E	A	L	T	V	A	S	Q
Template Known Secondary structure		.	.	.	.							G	G	G										T	T	T									B	S	S			T					.		T	T	S												S	S		T	T		T	T					T	T
Template Predicted Secondary structure		.	.	.	.																																								.
Template SS confidence
						292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	R	I	A	E	L	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	A	E	L	A	V	I	V	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions