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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank102Aligned Residues346
% Identity18%Templated3dhpa2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230..... ....240.........250.........260.........270.........280.........290.........300.....
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Query Sequence  DLRGLTNKL. DYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGI
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Template Sequence  RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRP. . . . . . . WWERYQPVSY. KLCTRSGNEDEFRNMVTRCNNVGV
Template Known Secondary structure 
TTTTTT




S
BB

TTTTS
.......GGGGGSBS
S.
S
BTTB
TT
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   20.........30.........40.........50....... ..60....... ..70.........80.........90.
 
   306...310.........320.........330.........340.........350.........360.........370.........380.....
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Query Sequence  RILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTD
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Template Sequence  RIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFNDGKCKTG. . . . . . . . . . . . . . . . . . . . . . . . . SG
Template Known Secondary structure 

STTS
SBS
BTT


BBGGGTBBTTTTB
GGGB
TTT

SS.........................SS
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   92.......100.........110.........120.........130.........140.... ..
 
   386...390.........400.........410.........420.........430.........440.........450.........460.....
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Query Sequence  IGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHV
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Template Sequence  DIENYNDATQVRDCRLSGLLDLALG. . . . . . . . . . . . . . . . . . . . . . . KDYVRSKIAEYMNHLI. DIGVAGFRIDASKHM
Template Known Secondary structure  B


TT
SBGGGB
TT.......................S.T

TTGGGS
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   147..150.........160.........170. ........180....... ..190.........200..
 
   466...470.........480.........490.........500.........510...... ...520.........530.........540..
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Query Sequence  ELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYR. HGFDAMINFDYQEQAAKAVDCLAQMD. .
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Template Sequence  APGDIKAILDKL. . . . . . . HNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMS
Template Known Secondary structure 
TT
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TTTS
TT







SSSS

GGGGTTTS
T
TT

GG
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   203......210.... .....220.........230.........240.........250.........260.........270.....
 
   543......550.........560......... 570.........580.... .....590.........600......
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Query Sequence  . . TTWQQMAEKLQGFNVLSYLSSHDTRLF. . . . . . . . . . . . . REGGDKAAELLLLAP. GAVQIFYGDESSRPFGPTGSDP
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Template Sequence  ALKNWGEGAGFMPSDRALVFVDNHDNQRGHGAGGASILTFADARLYKMAVGFMLAHPYGFTRVMSSYRWPRY. FENGKDV
Template Known Secondary structure  GGGG
SGGGT


TTT
S

TTGGGT
TT

TT


GGGS
SS
B




.TTT
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   276...280.........290.........300.........310.........320.........330.........340....... ..350....
 
   607..610...... ...620.........630.........
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Query Sequence  LQGTRSDMNW. . . . . . . . . . . . . . . QDVSGKSAASVAHWQKISQFRAR
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Template Sequence  NDWVGPPNDNGVTKEVTINPDTTCGNDWVCEHR. . ARQIRNMVNFRNV
Template Known Secondary structure  TTT

SSTT



B
TTS
B
TTB

GGG..S
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   355....360.........370.........380....... ..390.........400
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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