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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank96Aligned Residues321
% Identity21%Templated1ua7a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.21

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   223......230.........240.........250.........260.........270.........280.........290.........300..
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Query Sequence  FHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQ
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Template Sequence  AWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSN. . . . WYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEE
Template Known Secondary structure 
TTB
TTT
S




TGGG

BGGG....GGGGG
TTTT
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   14.....20.........30.........40.........50....... ..60.........70.........80.........
 
   303......310.........320.........330.........340.........350.........360.........370.........380..
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Query Sequence  RGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWI
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Template Sequence  YGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


SB

S
TTTS
TSTT


B


TT
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   90.........100.........110.........120.........130.......
 
   383......390.........400.........410.........420.........430.........440.........450.........460..
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Query Sequence  RTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTA
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Template Sequence  . . . . . . . . . . . . . . . QNSLLGLYDWNTQ. . . . . . . . . . . . . . . . . . . . . . . NTQVQSYLKRFLERAL. NDGADGFRFDAA
Template Known Secondary structure  ...............SBBTTB

TT.......................S.TT

TTG
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   138.140.........150 .........160...... ...170........
 
   463......470.........480.........490.........500.........510.........520.........530.........540..
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Query Sequence  KHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMD
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Template Sequence  KHIELPDDGSYGSQFWPNI. . . . . . . . . . . TNTSAEFQYGEILQDSASRDAAY. ANYMDVTASNYGHSIRSALKNRNLGV
Template Known Secondary structure  GGS

TTSGGG

S...........T
SS
S



STT

.TTS
T


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   179180.........190....... ..200.........210.........220 .........230.........240......
 
   543......550.........560......... 570.........580.. .......590.........600.........610..
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Query Sequence  TTWQQMAEKLQGFNVLSYLSSHDTRLF. . . . . . . . . REGGDKAAELLLL. APGAVQIFYGDESSRPFGPTGSDPLQGTRS
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Template Sequence  SNISHYASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRG
Template Known Secondary structure  SS
SSSS
GGG
SS
STT
SSTT

TSSSS


TT
BTTBS

SS
BTBS

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   247..250.........260.........270.........280.........290.........300.........310.........320......
 
   613......620.........630.........
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Query Sequence  DMNWQDVSGKSAASVAHWQKISQFRAR
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Template Sequence  SALFEDQA. . . . . . . . . ITAVNRFHNV
Template Known Secondary structure 
GGGG
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   327..330.... .....340....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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