Job Description P25718 Confidence 100.00% Date Thu Jan 5 11:42:17 GMT 2012 Rank 98 Aligned Residues 339 % Identity 19% Template d1jaea2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.65

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		227	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		D	L	R	G	L	T	N	K	L	.	D	Y	L	Q	Q	L	G	V	N	A	L	W	I	S	A	P	F	E	Q	I	H	G	W	V	G	G	G	T	K	G	D	F	P	H	Y	A	Y	H	G	Y	Y	T	Q	D	W	T	N	L	D	A	N	M	G	N	E	A	D	L	R	T	L	V	D	S	A	H	Q	R	G	I
Query Conservation											.
Alig confidence											.																											.	.	.	.	.	.	.	.	.												.
Template Conservation																																						.	.	.	.	.	.	.	.	.												.
Template Sequence		K	W	N	D	I	A	D	E	C	E	R	F	L	Q	P	Q	G	F	G	G	V	Q	I	S	P	P	N	E	Y	L	V	A	D	G	R	P	.	.	.	.	.	.	.	.	.	W	W	E	R	Y	Q	P	V	S	Y	I	.	I	N	T	R	S	G	D	E	S	A	F	T	D	M	T	R	R	C	N	D	A	G	V
Template Known Secondary structure													T	T	T	T	T	T										S		B	B			T	T			.	.	.	.	.	.	.	.	.	G	G	G	G	G	S	B			S		.	S			T	T																T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.												.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	F	D	V	V	M	N	H	T	G	Y	A	T	L	A	D	M	Q	E	Y	Q	F	G	A	L	Y	L	S	G	D	E	V	K	K	S	L	G	E	R	W	S	D	W	K	P	A	A	G	Q	T	W	H	S	F	N	D	Y	I	N	F	S	D	K	T	G	W	D	K	W	W	G	K	N	W	I	R	T	D
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Sequence		R	I	Y	V	D	A	V	I	N	H	M	T	G	M	N	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	T	S	G	S	S	A	D	H	D	G	M	N	Y	P	A	V	P	Y	G	S	G	D	F	H	S	P	C	E	V	N	N	Y	Q	D	A	D	N	V	R	N	C	E	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	B			S	S				B	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				B	T	T	T	T	B	B	T	T	T	T	B		G	G	G	B					B				T	T								S	B	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.													.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	D	Y	D	N	P	G	F	D	D	L	T	M	S	L	A	F	L	P	D	I	K	T	E	S	T	T	A	S	G	L	P	V	F	Y	K	N	K	M	D	T	H	A	K	A	I	D	G	Y	T	P	R	D	Y	L	T	H	W	L	S	Q	W	V	R	D	Y	G	I	D	G	F	R	V	D	T	A	K	H	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	G	L	R	D	L	N	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Y	V	R	G	V	L	I	D	Y	M	N	H	M	I	.	D	L	G	V	A	G	F	R	V	D	A	A	K	H	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B		B	B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																.		T	T							T	T	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
																	150	.	.	.	.	.	.	.	.	.																								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		E	L	P	A	W	Q	Q	L	K	T	E	A	S	A	A	L	R	E	W	K	K	A	N	P	D	K	A	L	D	D	K	P	F	W	M	T	G	E	A	W	G	H	G	V	M	Q	S	D	Y	Y	R	.	H	G	F	D	A	M	I	N	F	D	Y	Q	E	Q	A	A	K	A	V	D	C	L	A	Q	M	D	T	T
Query Conservation																																																					.
Alig confidence																	.	.	.	.	.	.																															.
Template Conservation																	.	.	.	.	.	.
Template Sequence		S	P	G	D	L	S	V	I	F	S	G	L	K	N	L	.	.	.	.	.	.	N	T	D	Y	G	F	A	D	G	A	R	P	F	I	Y	Q	E	V	I	D	L	G	G	E	A	I	S	K	N	E	Y	T	G	F	G	C	V	L	E	F	Q	F	G	V	S	L	G	N	A	F	Q	G	G	N	Q	L	K	N	L
Template Known Secondary structure												T					.	.	.	.	.	.		G	G	G	T			T	T													S	S	S	S			G	G	G	T	T	T	S	S																T	T	T	S		G	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
				545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.											570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.																.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.	.																.
Query Sequence		.	.	W	Q	Q	M	A	E	K	L	Q	G	F	N	V	L	S	Y	L	S	S	H	D	T	R	L	F	.	.	.	.	.	.	.	.	.	.	R	E	G	G	D	K	A	A	E	L	L	L	L	A	P	.	G	A	V	Q	I	F	Y	G	D	E	S	S	R	P	F	G	P	T	G	S	D	P	L	Q	G	T	R
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.	.																.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		A	N	W	G	P	E	W	G	L	L	E	G	L	D	A	V	V	F	V	D	N	H	D	N	Q	R	T	G	G	S	Q	I	L	T	Y	K	N	P	K	P	Y	K	M	A	I	A	F	M	L	A	H	P	Y	G	T	T	R	I	M	S	S	F	D	F	T	D	N	D	Q	G	P	P	Q	D	G	S	G	N	L	I
Template Known Secondary structure		G	G		S	G	G	G	T				G	G	G					S			T	T					S		T	T				T	T	S														S		S	S								B			S	S	T	T					B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		612	.	.	.	.	.	.	.	620	.	.	.	.	.					.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		S	D	M	N	W	Q	D	V	S	G	K	S	A	A	.	.	.	.	S	V	A	H	W	Q	K	I	S	Q	F	R	A	R	H
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		S	P	G	I	N	D	D	N	T	C	S	N	G	Y	V	C	E	H	R	W	R	Q	V	Y	G	M	V	G	F	R	N	A	V
Template Known Secondary structure							T	T	S				T	T	B			G	G	G	S													T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions