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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank86Aligned Residues327
% Identity24%Templated1eh9a3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution3.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PFDWH. . NATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVG
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Template Sequence  ETFLKKEDLIIYEIHVGTFTPE. . . . . . . . . . . . . . . . . . . . . . . GTFEGVIRKLDYLKDLGITAIEIMPIAQF. . . . . .
Template Known Secondary structure 

S

SSS


TTTSSSS.......................
STT




B

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   261........270.........280.........290.........300.........310.........320.........330.........340
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Query Sequence  GGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVK
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Template Sequence  . . . . . . . PGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWG.
Template Known Secondary structure  .......SSS


STT


TT
B
STT

TT


S


SSS

S

S
SS


SSS.
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   145....150.........160.........170.........180.........190.........200.........210......
 
   341........350.........360.........370.........380.........390.........400.........410.........420
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Query Sequence  KSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTFNFDDAE. . . . . . . . . .
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SSSTT..........
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   217..220.....
 
   421........430.........440.........450.........460.........470.........480.........490.........500
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Query Sequence  YKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWM
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Template Sequence  . . . . . . . . . . . . . SDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKHILEEIADVV. . . . . . . . . . . . HKYNRIV
Template Known Secondary structure  .............S



TTGGG



SSS
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   226...230.........240.........250.........260.........270... ......280
 
   501........510........ .520.........530..... ....540.........550.
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Query Sequence  TGEAWGHGVMQSDYYRHG. . . FDAMINFDYQEQAAKAV. . . . . . . . . . . DCLAQMDTTWQQMAEK. . . . . . . . . . . . . . .
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Template Conservation    
                                                                             
Template Sequence  IAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEP
Template Known Secondary structure 


S

TTTTS
GGGT



S
S


SGGGGG

SSS
S
SSTTTT


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   281........290.........300.........310.........320.........330.........340.........350.........360
 
   552.......560......... 570.........580.........590.........600........
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Query Sequence  . . . LQGFNVLSYLSSHDTRLF. . . . . . . . . . . . REGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQ. . . . . . . .
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Template Sequence  VGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGV
Template Known Secondary structure 

S

GGG

S

TTTT


GGGGS
SSSS

SSGGGT











STT
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   361........370.........380.........390.........400.........410.........420.........430.........440
 
   609610.........620 .........630.........640..
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Query Sequence  . . . . . . . GTRSDMNWQDVS. . . . . . . . GKSAASVAHWQKISQFRARHPA
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Template Conservation                                  
    
 
  

   
 
Template Sequence  REGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSI
Template Known Secondary structure  T


S
TTSTTS





T
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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