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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank52Aligned Residues405
% Identity24%Templatec2zidA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dextran glucosidase; PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  APFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGG
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Template Sequence  QKHWWHKATVYQIYPKSFMDTNGDGI. . . . . . . . . . . . . . . . . . GDLKGITSKLDYLQKLGVMAIWLSPVYDSPM. . . . .
Template Known Secondary structure 


GGGG


GGGT

SSSSSS..................

TTT
S





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   2.......10.........20....... ..30.........40.........50........
 
   262.......270.........280.........290.........300.........310.........320.........330.........340.
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Query Sequence  GTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKK
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Template Sequence  . . . . . . . . . DDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWC
Template Known Secondary structure  .........TTTTSS
S
GGG

TTT


SB

TTS
TTSGGGGGB
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   5960.........70.........80.........90.........100.........110.........120.........
 
   342.......350.........360.........370.........380.........390.........400.........410.........420.
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Query Sequence  SLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFY
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Template Sequence  DQPNDLESIFGGSAWQY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DDKSDQYYLHFFSKKQPDLNWE. . . . . . . . . . .
Template Known Secondary structure  SS

S
B
TTSSBS..............................TTTT
SS
TTS
BB
TT...........
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   130.........140...... ...150.........160........
 
   422.......430.........440.........450.........460.........470.........480.........490.........500.
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Query Sequence  KNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMT
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Template Sequence  . . . . . . . . . . . . NANLRQKIYDMMNFWI. DKGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFG. QHDLLTV
Template Known Secondary structure  ............
.TTT

TTGGGTT
BGGGTB
SS
TTTGG.GS

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   169170.........180.... .....190.........200.........210.........220....... ..230....
 
   502.......510..... ....520.........530....... ..540.........550... ......560......
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Query Sequence  GEAWGHGVMQSDYY. . . . RHGFDAMINFDYQEQAAKAVDC. . . . . . . . . LAQMDTTWQQMAEKLQ. . GFNVLSYLSSHDT
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Template Conservation   
                                                                           

 
Template Sequence  GQTWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQTELELGQGWNSLFWNNHDL
Template Known Secondary structure 
TT


GGG
S
S

TTGGGGB
TTS
TTSB

S

S
TTT



S

TTS
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   235....240.........250.........260.........270.........280.........290.........300.........310....
 
   567..570.. .......580.........590.........600.......
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Query Sequence  RLFREG. . . . . . . . . . . GDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPL. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                              

 
 
  
 
 
                                       
Template Sequence  PRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMDSIR
Template Known Secondary structure 

S
SSTTTSSSTTGGGT






SGGG


TTT

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   315....320.........330.........340.........350.........360.........370.........380.........390....
 
   608.610........ .620.........630.........640.........650.....
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Query Sequence  . . . . QGTRSDMNWQD. . . . . . . . . . . . . . . . . . . . . . . . . . . VSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQ.
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Template Conservation         
  
 
       
                                   
  

   
 
  
          
Template Sequence  MIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPTADK
Template Known Secondary structure 
GGGG
S




SSGGGGS

SSS
SS


GGGGTS
STTS
T




TT
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   395....400.........410.........420.........430.........440.........450.........460.........470....
 
   656...660.........670...
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Query Sequence  GYGFVREHGDDKVLVVWA
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Template Conservation 

   
       


 
Template Sequence  VFAYLRKVREERYLIVVN
Template Known Secondary structure  TT
Template Predicted Secondary structure 

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   475....480.........490..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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