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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank66Aligned Residues474
% Identity19%Templatec2x4bA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:limit dextrinase; PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130. ........140.........150..
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Query Sequence  DGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRECPKWDGLPLTV. . . . . . DVSATFPEGAAVRDYYSQQIA. . . . . . . .
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Template Conservation     


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Template Sequence  TGPLGAVFSE. . . . DSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQ
Template Known Secondary structure 
S


S....S
TT
SSTTTS

TTGGGTT
TTTT
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   127..130...... ...140.........150.........160.........170.........180.........190.........200..
 
   153......160.........170........ .180.........190.........200.........210.......
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Query Sequence  . . . . . IVKNGQIMLQPAATSNGLLLLERAET. . . . . . . . . . DTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGM
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Template Sequence  VLKCLAGDPYARSLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSD. . . . . . . .
Template Known Secondary structure 

TT
S
BSGGGSS


TT
GGGS
TTGGGS


S
GGG


T
TTS
TT........
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   203......210.........220.........230.........240.........250.........260.........270....
 
   218.220.........230.... .....240.........250.........260.........
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Query Sequence  AEIGTFHGGDLRGLTNK. . . . . . . LDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPH. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . SRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFH. . . . . . . . . . . . . FAGVDDIKSNWKFVDECELATFPP
Template Known Secondary structure  ......TTTSGGGGG
TTST




.............SSS
S
GGG




TTS
T
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   275....280.........290.........300.........310. ........320.........330.....
 
   270.........280......... 290.........300.........310.........320......
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Query Sequence  . . . . . . . . . . . . . . . . YAYHGYYTQDWTNLDANMGN. . . . . . . EADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQE
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Template Sequence  GSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISS
Template Known Secondary structure  T
STTSSS






GGGSS
SSSTTT


SB
S

SS
STT
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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
   327..330.........340.........350.........360.........370.........380.........390.........400......
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Query Sequence  YQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPD
Query Conservation                                                     
 
                       


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Template Conservation    
   
 

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Template Sequence  VLDKIVPGYYVRRDTN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
STTTSB
B
TT................................................................
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   416...420.........430.
 
   407..410.........420.........430.........440.........450.........460.........470.........480......
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Query Sequence  IKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKK
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Template Sequence  . . . . . . . . . . . . GQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSL. . . . . .
Template Known Secondary structure  ............S
B

TTSSSBB
TTSS


TTGGGSBT
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   432.......440.........450.........460.........470.........480.........490...
 
   487..490.........500.........510.........520 .........530..
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Query Sequence  ANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFD. . . . . . . . . AMINFDYQEQAA. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFY
Template Known Secondary structure 
SS
GGG





GGGGGGTTSSB

TTTTTTTT

S
TTS
TT


TTTTTTTS

SS
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   494.....500.........510.........520.........530.........540.........550.........560.........570...
 
   533......540.........550..... ....560.........570...
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Query Sequence  . . . . . . KAVDCLAQMDTTWQQMAEKLQGF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NVLSYLSSHDTRLFREGG. . .
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Template Conservation   
        
    
       
 
 
                             
   



 


  

 
     
Template Sequence  QGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVK
Template Known Secondary structure 


BT
BSS

TTS
TTTSB
TTS
BS

BSSGGG
S

SSS

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   574.....580.........590.........600.........610.........620.........630.........640.........650...
 
   574.....580.........590.........600......... 610........
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Query Sequence  . . . . . . . . . . . . . . DKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQG. . . . . . . . TRSDMNWQD. . . . . . . . . . . . .
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Template Sequence  TPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWP
Template Known Secondary structure  S
TTS
TSBSTTGGGT


TT
S
GGGS


TTSS



SS



GGG
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   654.....660.........670.........680.........690.........700.........710.........720.........730...
 
   619620.........630.........640.........650. ........660.....
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Query Sequence  . . . . . . . . . . . . . VSGKSAASVAHWQKISQFRARHPAIGAGKQTTL. . . . . . . . . . . . LLKQGYGFVREHGD. . . . . . . .
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Template Sequence  LMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQ
Template Known Secondary structure 
GGGS

TT
GGGG

S
S
STT

TT


SSS
SS

Template Predicted Secondary structure 




































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   734.....740.........750.........760.........770.........780.........790.........800.........810...
 
   666...670...
Predicted Secondary structure  .....
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Query Sequence  . . . . . DKVLVVWA
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Template Conservation       
 



 
Template Sequence  LDTNFSYVVTVFN
Template Known Secondary structure 

SS
Template Predicted Secondary structure 




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   814.....820......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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