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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank58Aligned Residues517
% Identity19%Templatec2fhfA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:pullulanase; PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  LPKGTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVREC
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Template Sequence  LQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTD. . . . . . . . . . . . SGVTFRVWAPTAQQVELVIYS
Template Known Secondary structure  TTS
TTSB
TS

T............T
TT
S
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   257..260.........270.........280.........290.........300... ......310.........320....
 
   122.......130. ........140.........150. ........160.........170.
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Query Sequence  PKWDGLPLTV. . . . . . . DVSATFPEGAAVRDYYSQQI. . . . . . . . . . . . . AIVKNGQIMLQPAATSNGLL. . . . . . . . . .
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Template Sequence  ADKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPE
Template Known Secondary structure  TT



TTT

GGGTT
TTTT

TT
S
B
GGGSS
B
TT
GGGS
T
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   325....330.........340.........350.........360.........370.........380.........390.........400....
 
   172.......180.........190.........200.........210.........220.........230.... .....240..
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Query Sequence  . . LLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNK. . . . . . . LDYLQQLG
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Template Sequence  GWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPA. . . . . . . . . . . . . . ELRGKYLALTAQESNMVQHLKQLSASG
Template Known Secondary structure  TGGG


SS

SST

TT
TTS
G..............GGTTSGGGGG
TTST
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   405....410.........420.........430.........440... ......450.........460.........470
 
   243......250.........260.........270
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Query Sequence  VNALWISAPFEQIHGWVGGGTKGDFPHY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVA
Template Known Secondary structure 

S

SSS


GGG


TTSB
TSTTGGGTTSS
BSTT
BTTB
T
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   471........480.........490.........500.........510.........520.........530.........540.........550
 
   271........280.........290.. .......300.. .......310.........320.........330........
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Query Sequence  . . . . AYHGYYTQDWTNLDANMGNEAD. . . . . . . LRTLVDSAHQ. RGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDE
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Template Sequence  QTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTD. . . . . . . . . . . . RTS
Template Known Secondary structure  TSSS






STTSS

STTTS


TTS

SSS
............TT
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   551........560.........570.........580.........590.........600.........610..... ...
 
   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  VKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLP
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Template Sequence  VLDKIVPWYYQRLNETT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
STTTSB
B
TTT...............................................................
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   619620.........630.....
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  VFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPF
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Template Sequence  GSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKA. . . . . . . . . . . . . . LNPDI
Template Known Secondary structure 

B

TTSSB
TTS


TTGGGSBT..............T
TT
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   636...640.........650.........660.........670.........680.........690...... ...700.
 
   499500..... ....510.........520.........530.... .....540.
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Query Sequence  WMTGEAW. . . . . . GHGVMQSDYYRHGFDAMINFDYQEQAAKA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VDCLAQM
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Template Sequence  YFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLA
Template Known Secondary structure 




S
TTTS
B

TTTTTTSS


S
TT

TT


GGGTTTTS

SS



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   702.......710.........720.........730.........740.........750.........760.........770.........780.
 
   542.......550..... ....560.........570... ..
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Query Sequence  DTTWQQMAEKLQGF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . NVLSYLSSHDTRLFREGG. . . . . . . . . . . . . . . . . DK
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Template Sequence  DLTRLGMAGNLADFVLIDKDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAV
Template Known Secondary structure  TT
BTT

TTS
GGGSTTS

BSSGGG
S

SSSS
S
TT

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   782.......790.........800.........810.........820.........830.........840.........850.........860.
 
   576...580.........590.........600......... 610.........620 ..
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Query Sequence  AAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQG. TRSDMNWQDVS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GK
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Template Sequence  SLATVMLGQGIAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETE
Template Known Secondary structure  TSSSTTGGGT


TT
S

TTS


TT
S

S
SSS


GGGTTSS



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   862.......870.........880.........890.........900.........910.........920.........930.........940.
 
   623......630.........640.........650. ........660..... ....670...
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Query Sequence  SAASVAHWQKISQFRARHPAIGAGKQTTL. . . . . . . . . . . . LLKQGYGFVREHGD. . . . . . . . . . DKVLVVWA
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Template Sequence  LKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVMTIDDGMQAGASLDSRVDGIVVAIN
Template Known Secondary structure  TS
GGGG


S
STT

TT
STTTSS
S
TT
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   942.......950.........960.........970.........980.........990.........1000.........1010....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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