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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank76Aligned Residues332
% Identity20%Templatec1jdaA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:1,4-alpha maltotetrahydrolase; PDBTitle: maltotetraose-forming exo-amylase
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   223.... ..230.........240.........250.........260.........270.........280...
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Query Sequence  FHGGD. . . . . . . . . . . . . . . . . . . LRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNL
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Template Sequence  YHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSG. . . . . GGEGYFWHDF. NK
Template Known Secondary structure 
GGG





TTSTTTTT
S


S




B
SSS

B.....

SSTT


S.

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   12.......20.........30.........40.........50.........60.........70... ......80... ..
 
   284.....290.........300.........310.........320.........330.........340.........350.........360...
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Query Sequence  DANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFND
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Template Sequence  NGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SSS

TT

TTB

TT
SS
S



SS.................................
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   86...90.........100.........110.........120.........130..
 
   364.....370.........380.........390.........400.........410.........420.........430.........440...
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Query Sequence  YINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTH
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Template Sequence  . . . . . . . . . . . . . QGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTG. . . . . . . . . . . . . . . . . . . . . . . HPQVYGMFRD
Template Known Secondary structure  .............SS
BGGGS


SSS
BTTBSS

STTSSSBB
TT.......................S
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   133......140.........150.........160...... ...170......
 
   444.....450.........460.........470.........480.........490.........500.........
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Query Sequence  WLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGV. . . . . . . . . . . . . .
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Template Sequence  EFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDS. . . . . . . . . . . . . . . . . ADNSFCVGQLWKGPSEYPNWDWRNTASWQ
Template Known Secondary structure  S
S
GGGS
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TTS




GGGS
TTSGGGSS
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   177..180.........190.........200.........210 .........220.........230.........
 
   510.........520.........530.........540.........550.........560......... 570.....
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Query Sequence  . MQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDTRLF. . . . . . . . . . . . . REGGDK
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Template Sequence  QIIKDWSDRAKCPVFDFALKERMQN. . GSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQ
Template Known Secondary structure 
S

..S
GGGGGGSGGG
SSTT
S

TTTS

SSGGG


SS


GGG
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   240.........250.........260.... .....270.........280.........290.........300.........310.......
 
   576...580.........590.........600.........610.........620.........630.........640.........650.....
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Query Sequence  AAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQ
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Template Sequence  AYAYILTSPGTPVVYWDHMYDWG. . . . . . . . . . . . . . . . . . . . . . . . . . . YGDFIRQLIQVRRAAGVRADSAISFHSGYS
Template Known Secondary structure  SSSTSS...........................
T

TT

TTSS
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   318.320.........330.........340 .........350.........360.........370
 
   656...660.........670.....
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Query Sequence  GYGFVREHGDDKVLVVWAGQ
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Template Conservation                
     
Template Sequence  GLVATVSGSQQTLVVALNSD
Template Known Secondary structure  S
SS
S

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   371........380.........390
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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