Job Description P0A776 Confidence 97.60% Date Thu Jan 5 11:05:00 GMT 2012 Rank 83 Aligned Residues 105 % Identity 26% Template c3p5tE_ PDB info PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.										.	.
Query SS confidence												.										.	.
Query Sequence		I	D	D	D	G	Y	R	P	N	V	.	G	I	V	I	C	N	R	Q	G	.	.	Q	V	M	W	A	R	R	F	G	Q	H	S	W	Q	F	P	Q	G	G	I	N	P	G	E	S	A	E	Q	A	M	Y	R	E	L	F	E	E	V	G	L	S	R	K	D	V	R	I	L	A	S	T	R	N	W	L	R	Y	K
Query Conservation												.										.	.
Alig confidence												.										.	.									.																																.
Template Conservation																																.																																.
Template Sequence		F	D	K	I	G	M	R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	G	.	T	T	F	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	V	.	L	Q	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N
Template Known Secondary structure					S		S													T	T										T	.	T	T					S						T	T																		.																	S
Template Predicted Secondary structure																																.																																.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	P	K	R	L	V	R	W	D	T	K	P	V	.	C	I	G	Q	K	Q	K	W	F	L	L	Q	L	V	S	G	D
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		F	E	P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A
Template Known Secondary structure		S	S	S			B	S	S			T	T		S	S		S												S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions