Job Description P16431 Confidence 100.00% Date Thu Jan 5 11:35:07 GMT 2012 Rank 7 Aligned Residues 354 % Identity 21% Template c2wpnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Resolution 2.04 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	N	V	V	P	I	G	P	L	H	V	T	S	D	E	P	G	H	F	R	L	F	V	D	G	E	N	I	I	D	A	D	Y	R	L	F	Y	V	H	R	G	M	E	K	L	A	E	T	R	M	G	Y	N	E	V	T	F	L	S	D	R	V	C	G	I	C	G	F	A	H	S	T	A	Y	T	T	S	V	E
Query Conservation
Alig confidence												.																									.															.													.
Template Conservation												.																									.															.													.
Template Sequence		G	R	T	T	I	A	I	D	P	V	.	T	R	I	E	G	H	L	K	A	E	V	V	V	E	N	G	K	V	V	D	A	R	L	S	.	G	G	M	Y	R	G	F	E	T	I	L	R	G	R	.	D	P	R	D	A	S	Q	I	V	Q	R	I	.	G	V	C	P	T	A	H	S	T	A	S	V	L	A	L	D
Template Known Secondary structure									S	S		.		S	S	S	S										T	T									.											T	T	T	S	.		G	G	G					G	G	G		.			S
Template Predicted Secondary structure												.																									.															.													.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																												.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	M	G	I	Q	V	P	E	R	A	Q	M	I	R	A	I	L	L	E	V	E	R	L	H	S	H	L	L	N	L	G	L	A	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	T	G	F	D	S	G	F	M	Q	F	F	R	V	R	E	T
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	F	G	A	K	V	P	N	N	G	R	I	T	R	N	L	I	F	G	A	N	Y	L	Q	S	H	I	L	H	F	Y	H	L	S	A	Q	D	F	V	Q	G	P	D	T	A	P	F	V	P	R	F	P	K	S	D	L	R	L	S	K	E	L	N	K	A	G	V	D	Q	Y	I	E	A	L	E	V	R	R	I
Template Known Secondary structure					T																														T	T	G	G	G	T	S				S	S	T	T	S		S			T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.						.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		S	M	K	M	A	E	I	L	T	G	A	R	K	T	Y	G	L	N	L	I	G	G	I	R	R	D	L	L	K	D	D	M	I	Q	T	R	Q	L	A	Q	Q	M	R	R	E	V	Q	E	.	.	.	.	.	L	V	D	V	L	L	S	T	P	N	M	E	Q	R	T	V	G	I	G	R	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	H	E	M	V	A	L	F	G	G	R	M	P	H	V	Q	G	Q	V	V	G	G	A	T	E	I	P	T	K	E	K	L	V	E	Y	A	A	R	F	K	K	V	R	D	F	V	E	Q	K	Y	V	P	V	V	Y	T	I	G	S	K	Y	K	D	M	F	K	V	G	Q	G	F	K	A	A	L	C	V	G	A	F
Template Known Secondary structure											S	S	S	S	S		S	S			T	T			S	S																								T											T		G	G	G	G	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
			379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	L	D	P	E	I	A	R	D	F	S	N	V	G	P	M	V	R	A	S	G	H	A	R	D	T	R	A	D	H	P	F	V	G	Y	G	L	L	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	D	N	S	G	K	K	H	L	F	M	P	G	V	Y	A	K	G	K	D	M	P	F	D	P	S	K	I	K	E	Y	V	K	Y	S	W	F	A	E	E	T	T	G	L	N	Y	K	E	G	K	T	I	P	A	P	D	K	A	G	A	Y	S	F	V	K	A	P	R	Y	D	G	L	S	L	E	V	G	P	L
Template Known Secondary structure				S	T	T	S												T	T							G	G	G						T	T	B	S	B		G	G	G	T	T	B		G	G	G					B		T	T		T	T			B	S	S						T	T	B			B		S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
																																418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	H	S	E	Q	G	C	D	V	I	S	R	L	K	V	R	I	N	E	V	Y	T	A	L	N	M	I	D	Y	G	L	D	N	L	P	G	G	P	L	M	V	E	G	F	T	Y	I	P	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	M	W	V	N	N	P	E	L	S	P	V	G	K	K	L	L	K	D	L	F	G	I	S	A	K	K	F	R	D	L	G	E	E	A	A	F	S	L	M	G	R	H	V	A	R	A	E	E	T	Y	Y	M	L	G	A	I	E	G	W	L	K	E	I	K	A	G	E	D	T	V	V	M	P	A	V	P	A	S
Template Known Secondary structure										B																		S	B	G	G	G	G						S	S																												T	T				B							S	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.										.	.	.	510	.	.	.	.	.	.	.	.	.	520							.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		R	F	A	L	G	F	A	E	A	P	R	G	D	D	I	H	W	S	M	T	G	D	N	Q	K	L	Y	R	W	R	C	R	A	A	T	Y	A	N	W	.	.	.	.	.	.	.	.	.	P	T	L	R	Y	M	L	R	G	N	T	V	S	D	.	.	.	.	.	.	A	P	L	I	I	G	S	L	D	P	C	Y
Query Conservation																																									.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence																						.																			.	.	.	.	.	.	.	.	.															.	.	.	.	.	.												.
Template Conservation																						.																																																											.
Template Sequence		A	E	G	T	G	F	T	E	A	P	R	G	S	L	L	H	Y	V	K	V	.	K	D	S	K	I	D	N	Y	Q	I	V	S	A	S	L	W	N	C	N	P	R	D	D	M	G	Q	R	G	A	V	E	E	A	L	I	G	I	P	V	D	D	I	Q	N	P	V	N	V	A	R	L	I	R	A	F	D	P	L	.
Template Known Secondary structure											T	T										.		T	T															S					T	T										T	T	T		B		S		T	T	S											T				.
Template Predicted Secondary structure																						.																																																											.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		533	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	T	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	A	V	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		491	.	.	.	.