Job Description P30139 Confidence 99.19% Date Thu Jan 5 11:46:05 GMT 2012 Rank 135 Aligned Residues 206 % Identity 14% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																				.	.	.	60	.	.	.	.	.
Predicted Secondary structure									.	.																.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	H	L	F	T	G	.	.	T	G	K	F	A	S	S	Q	L	M	V	E	A	I	R	.	.	.	A	S	G	S	Q	L	V	T	L	A	M	K	R	V	D	L	R	Q	H	N	D	A	I	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	A	A	G	V	T	L
Query Conservation									.	.																.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	N	A	N	V	A	Y	T	V	L	G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K	T	K	K	A	L
Template Known Secondary structure		S	S	S								T	T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												T				S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	N	T	S	G	A	K	T	A	E	E	A	I	F	A	A	H	L	A	R	E	A	L	G	T	N	W	L	K	L	E	I	H	P	D	A	R	W	L	L	P	D	P	I	E	T	L	K	A	A	E	T	L	V	Q	Q	G	F	V	V	L	P	Y	C	G	A	D	P	V	L	C	K	R	L	E	E	V	G	C
Query Conservation
Alig confidence																																	.	.	.	.	.																															.
Template Conservation																																	.	.	.	.	.																															.
Template Sequence		V	F	X	V	Y	Y	N	L	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	.	.	.	P	E	L	S	F	E	E	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	I	T	L	V	S	V	T	T	.	P	K	E	R	V	K	K	L	V	K	H	A	K
Template Known Secondary structure																									T	T							.	.	.	.	.	T	T			G	G	G												T									T	T	S	.										T	T
Template Predicted Secondary structure																																	.	.	.	.	.																															.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																																																		.	.	.
Query SS confidence																	.	.	.	.																																																		.	.	.
Query Sequence		A	A	V	M	P	L	G	A	P	I	G	S	N	Q	G	.	.	.	.	L	E	T	R	A	M	L	E	I	I	I	Q	Q	A	T	V	P	V	V	V	D	A	G	I	G	V	P	S	H	A	A	Q	A	L	E	M	G	A	D	A	V	L	V	N	T	A	I	A	V	.	.	.	A	D	D	P	V	N	M	A	K
Query Conservation																	.	.	.	.																																																		.	.	.
Alig confidence																	.	.	.	.																															.																			.	.	.
Template Conservation																																																			.
Template Sequence		G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	D	K	V	K	E	I	R	S	F	T	N	L	P	I	F	V	G	F	G	I	Q	N	N	Q	D	V	.	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S	I	V	K	C	F	K	Q	G	N	L	D	I	I	X	K
Template Known Secondary structure		S								S		S	S																			T	T			S						S	S			S	S				.				T	T	T	S	S												T	T	S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		219	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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