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Job DescriptionP30139
Confidence88.15%DateThu Jan 5 11:46:05 GMT 2012
Rank430Aligned Residues165
% Identity12%Templatec3q45E_
PDB info PDB header:isomeraseChain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family; PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90.........100.........110.........120.........130...
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Query Sequence  IAAGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLVQQGFVVLPYCGAD. . . . .
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Template Sequence  KKDKIIQTDYTVSIDEPHKMAADAVQIKKN. GFEIIKVKVGGS. . . . KELDVERIRMIREAAGDSITLRIDANQGWSVET
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S
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   125....130.........140.........150.... .....160...... ...170.........180.........190.........
 
   134.....140.........150.........160.........170.........180.........190....... ..200.........210.
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Query Sequence  . PVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMG. ADAVLVNTAIAVAD
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Template Sequence  AIETLTLLEPYNIQHCE. . . . . . . EPVSRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNLKLS. . KSA
Template Known Secondary structure  GGG

S
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B
GGGGGG
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   200.........210...... ...220.........230.........240.........250.........260....... ..270
 
   212.......220.........230.......
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Query Sequence  DPVNMAKAFRLAVEAGLLARQSGPGS
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Template Sequence  GITNALNIIRLAEQAHMPVQVGGFLE
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   271........280.........290......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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