Job Description P30139 Confidence 78.67% Date Thu Jan 5 11:46:05 GMT 2012 Rank 486 Aligned Residues 169 % Identity 17% Template c3ivuB_ PDB info PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og Resolution 2.72 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	V	E	A	I	R	A	S	G	S	Q	L	V	T	L	A	M	K	R	V	D	L	R	Q	H	N	D	A	I	L	E	P	L	I	A	A	G	V	T	L	L	P	N	T	S	G	A	K	T	A	E	E	A	I	F	A	A	H	L	A	R	E	A	L	G	T	N	W	L	K	L	E	I	H	P	D	A	R
Query Conservation
Alig confidence																													.	.																																.	.	.	.	.
Template Conservation																													.	.																																.	.	.	.	.
Template Sequence		I	Q	I	A	K	A	L	D	N	F	G	V	D	Y	I	E	L	T	S	P	V	A	S	E	Q	S	R	.	.	Q	D	C	E	A	I	C	K	L	G	L	K	C	K	I	L	T	H	I	R	C	H	M	D	D	A	R	V	A	V	E	.	.	.	.	.	T	G	V	D	G	V	D	V	V	I	G	T	S	Q	Y
Template Known Secondary structure												T		S							G	G	G						.	.								T	S			S	S								S											.	.	.	.	.	T	T		S								G	G	G
Template Predicted Secondary structure																													.	.																																.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		104	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		W	L	L	P	D	.	.	.	.	.	.	P	I	E	T	L	K	A	A	E	T	L	V	Q	Q	G	F	V	V	L	P	Y	C	G	A	D	.	.	.	.	.	.	.	.	P	V	L	C	K	R	L	E	E	V	G	C	A	A	V	M	P	L	G	A	P	I	G	S	N	Q	G	L	E	T	R	A	M	L	E	I
Query Conservation							.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																										.	.	.	.	.	.	.	.																	.
Template Conservation																																																														.
Template Sequence		L	R	K	Y	S	H	D	M	T	Y	I	I	D	S	A	T	E	V	I	N	F	V	K	S	K	G	I	E	V	R	F	S	S	E	D	S	F	R	S	D	L	V	D	L	L	S	L	Y	K	A	V	D	K	I	G	V	N	R	V	G	.	I	A	D	T	V	G	C	A	T	P	R	Q	V	Y	D	L	I	R	T
Template Known Secondary structure																										T	T								T	T	G	G	G	S																		S				.				S	S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		I	I	Q	Q	A	T	V	P	V	V	V	D	A	.	.	.	.	G	I	G	V	P	S	H	A	A	Q	A	L	E	M	G	A	D	A	V
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.			.
Template Conservation																					.
Template Sequence		L	R	G	V	V	S	C	D	I	E	C	H	F	H	N	D	T	G	M	.	A	I	A	N	A	Y	C	A	L	E	A	G	A	T	H	I
Template Known Secondary structure							S	S							B		T	T	S		.												T
Template Predicted Secondary structure																					.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions