Job Description P30139 Confidence 99.84% Date Thu Jan 5 11:46:05 GMT 2012 Rank 56 Aligned Residues 217 % Identity 18% Template c3gyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative; PDBTitle: didydroorotate dehydrogenase from leishmania major Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																												.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	A	D	K	T	F	D	S	H	L	F	T	G	T	G	K	F	A	S	S	Q	L	M	V	E	A	I	R	A	S	G	S	Q	L	V	T	L	A	M	K	R	V	D	L	R	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	A	I	L
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	L	N	N	T	F	A	N	P	F	M	N	A	A	G	V	M	C	T	T	T	E	E	L	V	A	M	T	E	S	A	S	G	S	L	V	S	K	S	C	T	P	A	L	R	E	G	N	P	T	P	R	Y	Q	A	L	P	L	G	S	I	N	S	M	G	L	P	N	N	G	F	D	F	Y	L	A	Y	A	A
Template Known Secondary structure				T	T				S	S	S					T	T	S	S		S	S										S	S		S									S	S		B			S		S							T	T										B
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																				.																																													.
Query SS confidence																																				.																																													.
Query Sequence		E	P	L	I	A	A	G	V	T	L	L	P	N	T	S	G	A	K	T	A	E	E	A	I	F	A	A	H	L	A	R	E	A	L	.	G	T	N	W	L	K	L	E	I	H	P	D	A	R	W	L	L	P	D	P	I	E	T	L	K	A	A	E	T	L	V	Q	Q	G	F	V	V	L	P	Y	C	G	A	D	.
Query Conservation																																				.																																													.
Alig confidence																																				.														.	.	.	.	.	.																										.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		E	Q	H	D	Y	G	K	K	P	L	F	L	S	M	S	G	L	S	M	R	E	N	V	E	M	C	K	R	L	A	A	V	A	T	E	K	G	V	I	L	E	L	N	L	D	F	D	A	.	.	.	.	.	.	M	R	Q	C	L	T	A	V	S	E	V	Y	P	H	S	F	G	V	K	M	P	P	Y	F	D	F
Template Known Secondary structure			T			T	T	T										S	S																															.	.	.	.	.	.														S											S
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
						134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																					.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.											.
Query SS confidence		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.											.
Query Sequence		.	.	.	.	P	V	L	C	K	R	L	E	E	V	G	C	A	A	V	M	P	L	G	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	S	N	Q	G	L	E	T	R	.	.	.	.	A	M	L	E	I	I	I	Q	Q	A	.	T	V	P	V	V	V	D	A	G	I
Query Conservation		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.											.
Alig confidence		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.											.
Template Conservation
Template Sequence		A	H	F	D	A	A	A	E	I	L	N	E	F	P	K	V	Q	F	I	T	C	I	N	S	I	G	N	G	L	V	I	D	A	E	T	E	S	V	V	I	K	P	K	Q	G	F	G	G	L	G	G	R	Y	V	L	P	T	A	L	A	N	I	N	A	F	Y	R	R	C	P	G	K	L	I	F	G	C	G	G	V
Template Known Secondary structure													T		T	T																		T	T	T	T			S		S	G	G	G	G						G	G	G	G																T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																										.					.
Query SS confidence																										.					.
Query Sequence		G	V	P	S	H	A	A	Q	A	L	E	M	G	A	D	A	V	L	V	N	T	A	I	A	.	V	A	D	D	.	P	V	N	M	A	K	A	F	R	L	A	V	E
Query Conservation																										.					.
Alig confidence																										.					.
Template Conservation
Template Sequence		Y	T	G	E	D	A	F	L	H	V	L	A	G	A	S	M	V	Q	V	G	T	A	L	Q	E	E	G	P	S	I	F	E	R	L	T	S	E	L	L	G	V	M	A
Template Known Secondary structure			S											T															T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions