Job Description P30139 Confidence 99.94% Date Thu Jan 5 11:46:05 GMT 2012 Rank 5 Aligned Residues 202 % Identity 18% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		T	F	D	S	H	L	F	T	G	T	G	K	F	A	S	S	Q	L	M	V	E	A	I	R	A	S	G	S	Q	.	.	L	V	T	L	A	M	K	R	V	D	L	R	Q	H	N	D	A	I	L	E	P	L	I	A	A	G	V	T	L	L	P	N	T	S	G	A	K	T	A	E	E	A	I	F	A	A	H	L	A
Query Conservation																															.	.
Alig confidence																															.	.																																				.
Template Conservation																																																																				.
Template Sequence		X	L	D	P	R	L	S	V	A	P	X	V	D	R	T	D	R	H	F	R	F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	.	S	D	P	K	S	L	A	E	A	A	R	I	G
Template Known Secondary structure						S							T	T	T		S												S	S	S	B														S										G	G	G		S								.	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.									.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.									.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		R	E	A	L	G	T	N	W	L	K	L	E	I	H	P	D	.	.	.	.	.	.	.	.	.	A	R	W	L	L	P	D	P	.	.	.	I	E	T	L	K	A	A	E	T	L	V	Q	Q	G	F	V	V	L	P	Y	C	G	A	D	.	.	.	.	.	.	.	.	P	V	L	C	K	R	L	E	E	V	G	C
Query Conservation																		.	.	.	.	.	.	.	.	.									.	.	.																									.	.	.	.	.	.	.	.
Alig confidence					.													.	.	.	.	.	.	.	.	.									.	.	.																									.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		E	A	F	.	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V
Template Known Secondary structure				T	.	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T																	T	T
Template Predicted Secondary structure					.
Template SS confidence
		80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																						.
Query SS confidence										.	.	.	.	.	.	.	.																						.
Query Sequence		A	A	V	M	P	L	G	A	.	.	.	.	.	.	.	.	P	I	G	S	N	Q	G	L	E	T	R	A	M	L	E	I	I	I	Q	Q	A	.	T	V	P	V	V	V	D	A	G	I	G	V	P	S	H	A	A	Q	A	L	E	M	G	A	D	A	V	L	V	N	T	A	I	A	V	A	D	D	P	V
Query Conservation										.	.	.	.	.	.	.	.																						.
Alig confidence										.	.	.	.	.	.	.	.																						.																					.															.	.
Template Conservation																																																												.															.	.
Template Sequence		K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	.	.	D	P	F
Template Known Secondary structure									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	T	T	S	S					S						.	.		G	G
Template Predicted Secondary structure																																																												.															.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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