 |
Job Description | P30139 | Confidence | 95.68% | Date | Thu Jan 5 11:46:05 GMT 2012 |
Rank | 291 | Aligned Residues | 111 |
% Identity | 11% | Template | c2yxbA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:coenzyme b12-dependent mutase; |
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
|
Resolution | 1.80 Å |
|
 |
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | |
|
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | |
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  | . | . |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | E | T | L | V | Q | Q | G | F | V | V | L | . |
. |
P | Y | C | G | A | D | P | V | L | C | K | R | L | E | E | V | G | C | A | A | V | M | P | L | G | A | P | I | G | S | N | Q | G | L | E | T | R | A | M | L | E | I | I | I | Q | Q | . |
A | T | V | P | V | V | V | D | A | G | I | G | V | P | S | H | A | A | Q |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   | . | . |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   | . |   |   |   |
|
|
|   |   |
|
|
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | R | A | L | R | D | A | G | F | E | V | V | Y | T | G | L | R | Q | T | P | E | Q | V | A | X | A | A | V | Q | E | D | V | D | V | I | G | V | S | I | L | N | G | A | H | L | . |
. |
H | L | X | K | R | L | X | A | K | L | R | E | L | G | A | D | D | I | P | V | V | L | G | G | T | I | P | I | P | D | L | E | P |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
|  |  |  |
|
|
| S | B |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  | S | S | S |
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | |
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
  |
  |   |
193 | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | E | M | G | A | D | A | V | L | V | N | T | A | I | A | V | A | D | D | P | V | N | M | A | K | A | F | R | L | A | V | E | A | G | L | L | A | R | Q | S |
Query Conservation |   |
  |   |   |   |
|
|
|   |
|   |
|
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   | . | . | . | . | . |   |   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|
Template Sequence |   |
L | R | S | L | G | I | R | E | I | . |
. |
. |
. |
. |
F | L | P | G | T | S | L | G | E | I | I | E | K | V | R | K | L | A | E | E | K | R | X | R | E | E | A |
Template Known Secondary structure |   |
 |  |  | T | T |
|
|  |  | . | . | . | . | . |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|