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Job DescriptionP30139
Confidence99.90%DateThu Jan 5 11:46:05 GMT 2012
Rank29Aligned Residues197
% Identity14%Templatec2e77B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:lactate oxidase; PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.. .......30.........40.........50.........60.........70......
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Query Sequence  RIADKTFDSHLFTGTGKFAS. . . . . . SQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIAAGVTLLPNTSGAKTAE
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Template Sequence  EILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEE. . . . . . ISEGLNGGPRWFQIYMAKDDQ
Template Known Secondary structure  TTSSS


S
GGGT
TTTS
TT
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......TT




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   10791080.........1090.........1100.........1110.........1120.........1130. ........1140.........1150..
 
   77..80.........90.........100.... .....110.......
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Query Sequence  EAIFAAHLAREALGTNWLKLEIHPDARW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LLPDPIETLKAAE
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Template Sequence  QNRDILDEAKSD. GATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIA
Template Known Secondary structure  .T
S

S
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TT


SS

TTTGGGTTS
GGG

S
S


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   1153......1160.... .....1170.........1180.........1190.........1200.........1210.........1220.........1230.
 
   118.120.........130.........140.........150..... ....160.........170.... .....180.........190....
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Query Sequence  TLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPI. GSNQGLETRAMLEIIIQQA. . TVPVVVDAGIGVPSHAAQAL
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Template Sequence  GHSGLPVFVKGIQH. . PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKAL
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S..TT
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GGGTSSSS


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   1232.......1240..... ....1250.........1260.........1270.........1280.........1290.........1300.........
 
   195....200........
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Query Sequence  EMGADAVLVNTAIA
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Template Sequence  ASGADVVALGRPVL
Template Known Secondary structure  TT
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   1310.........1320...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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