Job Description P0AED9 Confidence 100.00% Date Thu Jan 5 11:23:06 GMT 2012 Rank 1 Aligned Residues 414 % Identity 91% Template c3me5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 301 Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	A	Q	A	M	L	E	K	L	L	Q	I	Y	D	V	K	T	L	V	A	Q	L	N	G	V	G	E	N	H	W	S	A	A	I	L	K	R	A	L	A	N	D	S	A	W	H	R	L	S	E	K	E	F	A	H	L	Q	T	L	L	P	K	P	P	A	H	H	P	H	Y	A	F	R	F	I	D	L	F	A
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		N	A	A	Q	A	X	L	E	K	L	L	Q	I	Y	D	V	K	X	L	V	A	Q	L	N	G	V	G	E	N	H	W	S	A	A	I	L	K	R	.	.	.	.	.	.	.	A	L	A	L	S	E	K	E	F	A	H	L	Q	T	L	L	P	K	P	P	E	H	H	P	H	Y	A	F	R	F	I	D	L	F	A
Template Known Secondary structure													T	T	S												T		S	S										.	.	.	.	.	.	.						T								T	T	S					T	T	T	T			S							S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	G	I	R	R	G	F	E	S	I	G	G	Q	C	V	F	T	S	E	W	N	K	H	A	V	R	T	Y	K	A	N	H	Y	C	D	P	A	T	H	H	F	N	E	D	I	R	D	I	T	L	S	H	K	E	G	V	S	D	E	A	A	A	E	H	I	R	Q	H	I	P	E	H	D	V	L	L	A	G
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	G	G	I	R	R	G	F	E	S	I	G	G	Q	C	V	F	T	S	E	W	N	K	H	A	V	R	T	Y	K	A	N	H	Y	C	D	P	A	T	H	H	F	N	E	D	I	R	D	I	T	L	S	H	Q	E	G	V	S	D	E	A	.	.	.	.	.	.	.	.	.	.	A	A	E	H	I	R	Q	H
Template Known Secondary structure		T	T	S								T	T	T																					S				T	T	T					S		T						T	T		T	T	S					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.											.	160	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	C	Q	P	F	S	L	A	G	V	S	K	K	N	S	L	G	R	A	H	G	F	A	C	D	T	Q	G	T	L	F	F	D	V	V	R	I	I	D	A	R	R	P	A	M	F	V	L	E	N	V	K	N	L	K	S	H	D	Q	G	K	T	F	R	I	I	M	Q	T	L	D	E	L	G	Y	D	V	A	D
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		I	P	E	H	D	V	L	L	A	G	F	P	C	Q	P	.	.	.	.	.	.	.	.	F	C	D	T	Q	G	T	L	F	F	D	V	V	R	I	I	D	A	R	R	P	A	X	F	V	L	E	N	V	K	N	L	K	S	H	D	K	G	K	T	F	R	I	I	X	Q	T	L	D	E	L	G	Y	D	V	A	D
Template Known Secondary structure		S				S											.	.	.	.	.	.	.	.			T	T	T	T	S															S								T	T	T	T	T	G	G	G	G													T	T				T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	N	G	P	D	D	P	K	I	I	D	G	K	H	F	L	P	Q	H	R	E	R	I	V	L	V	G	F	R	R	D	L	N	L	K	A	D	F	T	L	R	D	I	S	E	C	F	P	A	Q	R	V	T	L	A	Q	L	L	D	P	M	V	E	A	K	Y	I	L	T	P	V	L	W	K	Y	L	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	D	N	G	P	D	D	P	K	I	I	D	G	K	H	F	L	P	Q	H	R	E	R	I	V	L	V	G	F	R	R	D	L	N	L	K	A	D	F	T	L	R	D	I	S	E	C	F	P	A	Q	R	V	T	L	A	Q	L	L	D	P	X	V	E	A	K	Y	I	L	T	P	V	L	W	K	Y	L	Y	R
Template Known Secondary structure		T	T			S	T	T		T	T				G	G	G	T	S	S	B												G	G	G				T	T			G	G	G	G	G	G	G	S		S	S				T	G	G	G	S		S	S			G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	K	K	H	Q	A	R	G	N	G	F	G	Y	G	M	V	Y	P	N	N	P	Q	S	V	T	R	T	L	S	A	R	Y	Y	K	D	G	A	E	I	L	I	D	R	G	W	D	M	A	T	G	E	K	D	F	D	D	P	L	N	Q	Q	H	R	P	R	R	L	T	P	R	E	C	A	R	L	M	G	F	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		Y	A	K	K	G	X	V	Y	.	.	.	.	.	.	.	.	.	.	P	N	N	P	Q	S	V	T	R	T	.	.	.	L	S	A	R	D	G	A	E	I	L	I	D	R	G	W	D	X	A	T	G	E	K	D	F	D	D	P	L	N	Q	Q	H	R	P	R	R	L	T	P	R	E	C	A	R	L	X	G	F	E
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	T	T	S	G	G	G	G	T			.	.	.	B						S	S	S															T	T		T	T	G	G	G	G															T	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.											.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	G	E	A	K	F	R	I	P	V	S	D	T	Q	A	Y	R	Q	F	G	N	S	V	V	V	P	V	F	A	A	V	A	K	L	L	E	P	K	I	K	Q	A	V	A	L	R	Q	Q	E	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	G	E	A	K	F	R	I	P	V	S	D	T	Q	A	Y	R	Q	F	G	N	S	V	V	V	P	V	F	A	A	V	A	K	L	L	E	P	K	I	K	Q	A	V	A	L	R	Q	Q	E	A	Q
Template Known Secondary structure			T	T				S				S											T	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.