Job Description P0AED9 Confidence 41.22% Date Thu Jan 5 11:23:06 GMT 2012 Rank 283 Aligned Residues 123 % Identity 14% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																															.	.											.	.	.
Query SS confidence																															.	.											.	.	.
Query Sequence		A	H	L	Q	T	L	L	P	K	P	P	A	H	H	P	H	Y	A	F	R	F	I	D	L	F	A	G	I	G	.	.	G	I	R	R	G	F	E	S	I	G	.	.	.	G	Q	C	V	F	T	S	E	W	N	K	H	A	V	R	T	Y	K	A	N	H	Y	C	D	P	A	T	H	H	F	N	E	D	I	R	D
Query Conservation																															.	.											.	.	.
Alig confidence																.	.							.	.	.	.				.	.											.	.	.
Template Conservation																.	.							.	.	.	.
Template Sequence		Q	L	I	Q	N	L	V	P	E	D	K	L	S	R	.	.	C	K	I	T	V	V	.	.	.	.	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G
Template Known Secondary structure								S	S							.	.							.	.	.	.			S												T	T	T	S		S							S															T	T	T	T		S
Template Predicted Secondary structure																.	.							.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	S	H	K	E	G	V	S	D	E	A	A	A	E	H	I	R	Q	H	I	P	E	H	D	V	L	L	A	G	F	P	C	Q	P	F	S	L	A	G	V	S	K	K	N	S	L	G	R	A	H	G	F	A	C	D	T	Q	G	T	L	F	F	D	V	V	R	I	I	D	A	R	R	P	A	M	F	V	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	Y	N	V	S	A	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	V	I	I	T	A	G	A	R	M	V	S	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I
Template Known Secondary structure		S	S	G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.								S					T	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	S		T	T											T	T	T					S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.															.	90	.	.	.	.	.	.	.	.	.	100	.													.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions