Secondary structure and disorder prediction

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Sequence		M	P	H	I	D	I	K	C	F	P	R	E	L	D	E	Q	Q	K	A	A	L	A	A	D	I	T	D	V	I	I	R	H	L	N	S	K	D	S	S	I	S	I	A	L	Q	Q	I	Q	P	E	S	W	Q	A	I	W	D	A	E	I
Secondary structure
SS confidence
Disorder		?	?	?										?																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Sequence		A	P	Q	M	E	A	L	I	K	K	P	G	Y	S	M	N	A
Secondary structure
SS confidence
Disorder					?									?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gyx chain A Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 100.0% Identity: 100% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: 4-oxalocrotonate tautomerase-like Phyre2 PDB 2x4k chain B Region: 1 - 58 Aligned: 57 Modelled: 58 Confidence: 99.5% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) Phyre2 PDB 3mb2 chain G Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 99.5% Identity: 20% PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily Phyre2 PDB 3abf chain B Region: 1 - 58 Aligned: 57 Modelled: 58 Confidence: 99.5% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) Phyre2 PDB 1otf chain A Region: 2 - 58 Aligned: 56 Modelled: 57 Confidence: 99.5% Identity: 9% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: 4-oxalocrotonate tautomerase-like Phyre2 PDB 1bjp chain A Region: 2 - 52 Aligned: 50 Modelled: 51 Confidence: 99.4% Identity: 18% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: 4-oxalocrotonate tautomerase-like Phyre2 PDB 3ry0 chain A Region: 2 - 52 Aligned: 50 Modelled: 51 Confidence: 99.4% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway Phyre2 PDB 2op8 chain A Region: 2 - 58 Aligned: 56 Modelled: 57 Confidence: 99.4% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase Phyre2 PDB 2orm chain A Region: 2 - 52 Aligned: 50 Modelled: 51 Confidence: 99.4% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. Phyre2 PDB 3m20 chain A Region: 2 - 52 Aligned: 49 Modelled: 51 Confidence: 99.2% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution Phyre2 PDB 1mww chain A Region: 3 - 58 Aligned: 55 Modelled: 56 Confidence: 99.1% Identity: 15% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: Hypothetical protein HI1388.1 Phyre2 PDB 3mlc chain C Region: 1 - 52 Aligned: 50 Modelled: 52 Confidence: 99.1% Identity: 20% PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate Phyre2 PDB 2flz chain C Region: 2 - 52 Aligned: 51 Modelled: 51 Confidence: 98.9% Identity: 16% PDB header:hydrolase Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase; PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site Phyre2 PDB 2aal chain A domain 1 Region: 1 - 52 Aligned: 50 Modelled: 52 Confidence: 98.9% Identity: 16% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MSAD-like Phyre2 PDB 3n4d chain F Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 98.8% Identity: 16% PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate Phyre2 PDB 3c6v chain B Region: 1 - 52 Aligned: 51 Modelled: 51 Confidence: 97.9% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130; PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus Phyre2 PDB 1uiz chain A Region: 3 - 52 Aligned: 49 Modelled: 50 Confidence: 97.9% Identity: 10% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MIF-related Phyre2 PDB 3gac chain D Region: 3 - 52 Aligned: 49 Modelled: 50 Confidence: 97.8% Identity: 16% PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp Phyre2 PDB 2xcz chain A Region: 3 - 52 Aligned: 49 Modelled: 50 Confidence: 97.8% Identity: 16% PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus Phyre2 PDB 2os5 chain C Region: 3 - 52 Aligned: 49 Modelled: 50 Confidence: 97.6% Identity: 16% PDB header:cytokine Chain: C: PDB Molecule:acemif; PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum Phyre2 1 d1gyxa_ 2 c2x4kB_ 3 c3mb2G_ 4 c3abfB_ 5 d1otfa_ 6 d1bjpa_ 7 c3ry0A_ 8 c2op8A_ 9 c2ormA_ 10 c3m20A_ 11 d1mwwa_ 12 c3mlcC_ 13 c2flzC_ 14 d2aala1 15 c3n4dF_ 16 c3c6vB_ 17 d1uiza_ 18 c3gacD_ 19 c2xczA_ 20 c2os5C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1gyxa_ 100.0 100 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 2 c2x4kB_ 99.5 16 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 3 c3mb2G_ 99.5 20 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 4 c3abfB_ 99.5 16 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 5 d1otfa_ 99.5 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 6 d1bjpa_ 99.4 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 7 c3ry0A_ 99.4 22 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 8 c2op8A_ 99.4 13 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 9 c2ormA_ 99.4 24 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 10 c3m20A_ 99.2 22 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 11 d1mwwa_ 99.1 15 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 12 c3mlcC_ 99.1 20 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 13 c2flzC_ 98.9 16 PDB header:hydrolase Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase; PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site 14 d2aala1 98.9 16 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 15 c3n4dF_ 98.8 16 PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate 16 c3c6vB_ 97.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130; PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus 17 d1uiza_ 97.9 10 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 18 c3gacD_ 97.8 16 PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp 19 c2xczA_ 97.8 16 PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus 20 c2os5C_ 97.6 16 PDB header:cytokine Chain: C: PDB Molecule:acemif; PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum 21 d1dpta_ not modelled 97.6 10 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 22 d1hfoa_ not modelled 97.6 8 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 23 d2gdga1 not modelled 97.5 6 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 24 d1gd0a_ not modelled 97.4 6 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 25 c3e6qL_ not modelled 97.4 14 PDB header:isomerase Chain: L: PDB Molecule:putative 5-carboxymethyl-2-hydroxymuconate isomerase; PDBTitle: putative 5-carboxymethyl-2-hydroxymuconate isomerase from pseudomonas2 aeruginosa. 26 d1s0ya_ not modelled 97.4 23 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 27 c3fwtA_ not modelled 97.2 22 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 28 c3b64A_ not modelled 97.0 18 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 29 c3t5sA_ not modelled 97.0 16 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 30 d1otga_ not modelled 96.9 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) 31 d1fima_ not modelled 96.3 7 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 32 d1s0yb_ not modelled 96.0 22 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 33 c3ej9D_ not modelled 96.0 22 PDB header:hydrolase Chain: D: PDB Molecule:beta-subunit of trans-3-chloroacrylic acid dehalogenase; PDBTitle: structural and mechanistic analysis of trans-3-chloroacrylic acid2 dehalogenase activity 34 c3mb2J_ not modelled 94.7 23 PDB header:isomerase Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 35 d1u9da_ not modelled 92.0 21 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:VC0714-like 36 d2ivya1 not modelled 45.1 14 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 37 d1wh9a_ not modelled 40.0 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 38 d2daya1 not modelled 32.0 20 Fold:UBC-like Superfamily:UBC-like Family:RWD domain 39 c2eg5C_ not modelled 28.1 19 PDB header:transferase Chain: C: PDB Molecule:xanthosine methyltransferase; PDBTitle: the structure of xanthosine methyltransferase 40 d1zj8a1 not modelled 24.8 6 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 41 c3hrdF_ not modelled 21.1 10 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 42 c3fxeA_ not modelled 21.0 25 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 43 d1wjwa_ not modelled 20.2 6 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 44 c2ebmA_ not modelled 19.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rwd domain-containing protein 1; PDBTitle: solution structure of the rwd domain of human rwd domain2 containing protein 1 45 d1v97a5 not modelled 17.8 23 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 46 d2akja1 not modelled 17.4 14 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 47 c2y9jt_ not modelled 17.2 15 PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 48 d2i0xa1 not modelled 16.9 11 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 49 d1lq9a_ not modelled 16.2 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Actinorhodin biosynthesis monooxygenase ActVa-Orf6 50 c2kl0A_ not modelled 16.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 51 d1wh5a_ not modelled 14.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 52 d1ukxa_ not modelled 13.4 17 Fold:UBC-like Superfamily:UBC-like Family:RWD domain 53 c2v4iA_ not modelled 12.4 17 PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2 54 d1vkua_ not modelled 12.3 8 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 55 d1lcda_ not modelled 12.2 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 56 d1t3qb2 not modelled 11.8 14 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 57 d1yh5a1 not modelled 11.6 10 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 58 d3e11a1 not modelled 11.2 13 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TTHA0227-like 59 d1a3qa1 not modelled 10.8 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 60 d1ffvb2 not modelled 10.8 14 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 61 d1p5dx4 not modelled 10.8 13 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 62 d1zud21 not modelled 10.7 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 63 c1sb3D_ not modelled 10.7 18 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 64 d2ejqa1 not modelled 10.5 3 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TTHA0227-like 65 d1n62b2 not modelled 10.5 18 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 66 c3eubL_ not modelled 10.2 23 PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 67 d1aopa1 not modelled 10.1 10 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 68 d1hlva1 not modelled 9.8 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 69 c2ebkA_ not modelled 9.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rwd domain-containing protein 3; PDBTitle: solution structure of the rwd domain of human rwd domain2 containing protein 3 70 c3epvB_ not modelled 9.6 21 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 71 c2w54F_ not modelled 9.6 14 PDB header:oxidoreductase Chain: F: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde 72 d2bjca1 not modelled 9.4 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 73 d1tygb_ not modelled 9.1 6 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 74 d1qpza1 not modelled 9.0 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 75 c1t3qB_ not modelled 8.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 76 c1a3qA_ not modelled 8.9 18 PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna 77 c3oq2A_ not modelled 8.7 19 PDB header:immune system Chain: A: PDB Molecule:crispr-associated protein cas2; PDBTitle: structure of a crispr associated protein cas2 from desulfovibrio2 vulgaris 78 c2wwaJ_ not modelled 8.7 15 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 79 c2a67C_ not modelled 8.6 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:isochorismatase family protein; PDBTitle: crystal structure of isochorismatase family protein 80 d1jrob2 not modelled 8.4 14 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 81 d1w55a2 not modelled 8.4 14 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 82 d1ooha_ not modelled 8.3 11 Fold:EF Hand-like Superfamily:Insect pheromone/odorant-binding proteins Family:Insect pheromone/odorant-binding proteins 83 c2qnwA_ not modelled 8.3 22 PDB header:signaling protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein 84 d2cu3a1 not modelled 8.1 3 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 85 c1tygG_ not modelled 8.1 6 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 86 d1zpwx1 not modelled 7.9 19 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 87 d1iv3a_ not modelled 7.8 14 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 88 c2d4gA_ not modelled 7.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bsu11850; PDBTitle: structure of yjcg protein, a putative 2'-5' rna ligase from2 bacillus subtilis 89 d1wpia1 not modelled 7.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YKR049C-like 90 c2jnsA_ not modelled 7.5 23 PDB header:unknown function Chain: A: PDB Molecule:bromodomain-containing protein 4; PDBTitle: solution structure of the bromodomain-containing protein 42 et domain 91 d1m6ex_ not modelled 7.4 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Salicylic acid carboxyl methyltransferase (SAMT) 92 d1my7a_ not modelled 7.4 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 93 c3f0gA_ not modelled 7.4 10 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp 94 d2v4jb2 not modelled 7.4 5 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 95 c2fvfA_ not modelled 7.2 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structure of 10:0-acp (protein with docked fatty acid) 96 c1vraA_ not modelled 7.2 7 PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution 97 d2jpqa1 not modelled 7.2 12 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 98 d1oy3c_ not modelled 7.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 99 d1hska2 not modelled 7.2 3 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0