Job Description P31992 Confidence 8.87% Date Thu Jan 5 11:48:57 GMT 2012 Rank 76 Aligned Residues 40 % Identity 18% Template c1a3qA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna Resolution 2.10 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		N	S	K	D	S	S	I	S	I	A	L	Q	Q	I	Q	P	E	S	W	Q	A	.	.	.	I	W	D	A	E	I	A	P	Q	M	E	A	L	I	K	K	P	G	Y
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		K	V	Q	K	D	D	I	E	V	R	F	Y	E	D	D	E	N	G	W	Q	A	F	G	D	F	S	P	T	D	V	H	K	Q	Y	A	I	V	F	R	T	P	P	Y
Template Known Secondary structure		S			T	T	T									S	S	S							B			G	G	G			T	T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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