Job Description P36659 Confidence 23.51% Date Thu Jan 5 11:53:32 GMT 2012 Rank 93 Aligned Residues 43 % Identity 19% Template c3u2bC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	A	Y	R	R	L	A	R	K	Y	H	P	D	V	S	K	E	P	D	A	E	A	R	F	K	E	V	A	E	A	W	E	V	L	S	D	E	Q	R	R	A	E	Y	D	Q	M
Query Conservation
Alig confidence																			.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		S	Q	I	E	R	R	K	I	M	E	Q	S	P	D	M	H	N	.	.	.	.	A	E	I	S	K	R	L	G	K	R	W	K	L	L	K	D	S	D	K	I	P	F	I	Q	E	A
Template Known Secondary structure											T	T	S	T	T	S			.	.	.	.														S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions