|   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | N | R | R | A | E | C | D | L | A | A | F | Q | N | S | P | K | Q | T | Y | Q | A | E | K | A | R | D | R | K | L | C | A | N | L | E | E | A | I | R | R | S | G | L | Q | D | G | M | T | V | S | F | H | H | A | F | R | G | G | D | L | T | V | N | M | V | M | D | V | I | A | K | M | G | F | K | N | L | T | L | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|
|
|
|
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|
|
|   |   |
|
|
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |
|
|
|
|
|
|
|
|   |
Template Sequence |   |
W | L | A | S | E | T | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | R | R | R | K | I | C | D | S | L | E | E | A | I | R | R | S | G | L | K | N | G | X | T | I | S | F | H | H | A | F | R | G | G | D | K | V | V | N | X | V | X | A | K | L | A | E | X | G | F | R | D | L | T | L | A |
Template Known Secondary structure |   |
G | G | G |
| T | T |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  | T | T |  |  | S | S |  |  |  |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |
|
| T | T | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | S | L | S | D | C | H | A | P | L | V | E | H | I | R | Q | G | V | V | T | R | I | Y | T | S | G | L | R | G | P | L | A | E | E | I | S | R | G | L | L | A | E | P | V | Q | I | H | S | H | G | G | R | V | H | L | V | Q | S | G | E | L | N | I | D | V | A | F | L | G | V | P | S | C | D | E | F | G | N | A |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|
|   |
|   |
|
|
|   |
|
|   |
|
|
|
|
|
|   |
|   |
|   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
|   |
Template Sequence |   |
S | S | S | L | I | D | A | H | W | P | L | I | E | H | I | K | N | G | V | V | R | Q | I | Y | T | S | G | L | R | G | K | L | G | E | E | I | S | A | G | L | X | E | N | P | V | Q | I | H | S | H | G | G | R | V | K | L | I | Q | S | G | E | L | N | I | D | V | A | F | L | G | V | P | C | C | D | E | F | G | N | A |
Template Known Secondary structure |   |
 | S |
|
|
| G | G | G | T | T |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  | T |
|
| S | S |
|
|  |  |
|
|  |  |  |  |  |  |  |  |  | T | T | S | S |
|
| S |  |  |  |  |  |  | S |  |  |  | T | T |
|
|  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
  |
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |
|  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | Y | T | G | K | A | C | C | G | S | L | G | Y | A | I | V | D | A | D | N | A | K | Q | V | V | M | L | T | E | E | L | L | P | Y | P | H | N | P | A | S | I | E | Q | D | Q | V | D | L | I | V | K | V | D | R | V | G | D | A | A | K | I | G | A |
Query Conservation |   |
|   |   |   |
|   |
|   |   |   |
|
|   |   |
|   |
|
|
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |
|   |
|
|   |   |   |
|
|   |
|
|   |   |
|   |
|   |
|
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|   |
|
|
|   |
|
|
|   |
|   |   |
|   |
|
|   |
|   |   |
|
|
|
|
|   |
|
|   |
|
|
|
|   |
|
|   |
|
Template Sequence |   |
N | G | F | S | G | K | S | R | C | G | S | L | G | Y | A | Q | V | D | A | Q | Y | A | K | C | V | V | L | L | T | E | E | W | V | E | F | P | N | Y | P | A | S | I | A | Q | D | Q | V | D | L | I | V | Q | V | D | E | V | G | D | P | E | K | I | T | A |
Template Known Secondary structure |   |
 | S | S | S | S | S | S |
|
|
|
|
| T | T |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  | S |
|  |  |
| S | S |
| S | S |
| S | B |
| G | G | G |
| S |  |  |  |  |
| S |
| S | S |
|  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
  |