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Job DescriptionP75726
Confidence100.00%DateThu Jan 5 12:13:30 GMT 2012
Rank2Aligned Residues474
% Identity55%Templatec2hj0A_
PDB info PDB header:lyaseChain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target).
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  QAEKARDRKLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVV
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Template Sequence  KPVKPSDDKLLSSIHEAIEKTRLKDGXTISFHHHFREGDYVXNXVLDEIAKXGIKDISIAPSSIANVHEPLIDHIKNGVV
Template Known Secondary structure 



TT


S
TT

TT


TTGGGB
TT

SS


GGGTTTTS
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   3940.........50.........60.........70.........80.........90.........100.........110........
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  TRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNIDVAFLGVPSCDEFGNANGYTGKACCGSLGYAIVDAD
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Template Sequence  TNITSSGLRDKVGAAISEGIXENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAXIDAK
Template Known Secondary structure  SB
TT

SS


TSS

SS
TTS
SSSSSS

S

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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  NAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
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Template Sequence  YADQVVIVTDTLVPYPNTPISIPQTDVDYIVVVDAIGDPEGIAKGATRYTKNPKELLIAEYAAKVITSSPYYKEGFSFQT
Template Known Secondary structure 
SSSB

SS
SS
SB
GGG
S
S
SB
TS







TSTT
STT

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   199200.........210.........220.........230.........240.........250.........260.........270........
 
   277..280.........290.........300.........310.........320.........330...... ...340.........350.....
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Query Sequence  GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQS. LARNPNHIEISANQYANWG
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Template Sequence  GTGGASLAVTRFXREQXIKDDIKANFALGGITNAXVELLEEGLVDKILDVQDFDHPSAVSLDRNAEKHYEIDANXYASPL
Template Known Secondary structure 
SSS



S
TTSSSSTTTT


SS
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   279280.........290.........300.........310.........320.........330.........340.........350........
 
   356...360.........370.........380.........390.........400.........410.........420.........430.....
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Query Sequence  SKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRGASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSV
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Template Sequence  SKGSVINQLDICVLSALEVDTNFNVNVXTGSDGVIRGASGGHCDTAFAAKXSLVISPLVRGRIPTFVDKVNTVITPGTSV
Template Known Secondary structure  SS

GGGG
S

S
TT


SB
TT

B

B
TTSS

STTSB
SS
SS
SB
GGG
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   359360.........370.........380.........390.........400.........410.........420.........430........
 
   436...440.........450.........460.........470.........480.........490.........500.........510
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Query Sequence  DILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
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Template Sequence  DVVVTEVGIAINPNRPDLIEYFKDLKVPQLTIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLIDVVRNVLE
Template Known Secondary structure 

SS

TT
TTT
SS


S





TTSS

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   439440.........450.........460.........470.........480.........490.........500.........510...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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