Job Description P00722 Confidence 97.43% Date Thu Jan 5 10:56:50 GMT 2012 Rank 120 Aligned Residues 111 % Identity 14% Template d1vema2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.85

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.	.	.										.	.	400	.	.	.	.	.	.	.	.	.	410	.														.	.	.	.	.	.		.	.
Predicted Secondary structure																									.	.	.	.	.								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query SS confidence																									.	.	.	.	.								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query Sequence		M	D	E	Q	T	M	V	Q	D	I	L	L	M	K	Q	N	N	F	N	A	V	R	C	.	.	.	.	.	S	H	Y	P	N	H	P	.	.	.	.	.	.	.	.	.	L	W	Y	T	L	C	D	R	Y	G	L	Y	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	A	N	I	E	.	T	H
Query Conservation																									.	.	.	.	.								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.
Alig confidence																									.	.	.	.	.								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation
Template Sequence		T	N	W	E	T	F	E	N	D	L	R	W	A	K	Q	N	G	F	Y	A	I	T	V	D	F	W	W	G	D	M	E	K	N	G	D	Q	Q	F	D	F	S	Y	A	Q	R	F	A	Q	S	V	K	N	A	G	M	K	M	I	P	I	I	S	T	H	Q	C	G	G	N	V	G	D	D	C	N	V	P	I	P	S
Template Known Secondary structure		S															T	T														T		S	S	T	T																	T	T										S		B	S	S	S	T	T					B				G
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430																											.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.																.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	M	V	P	M	N	R	L	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	W	L	P	A	M	S	E	R	V	T	R	M	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	R	N	H	P	S	V	I	I	W	S
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	V	W	N	Q	K	S	D	D	S	L	Y	F	K	S	E	T	G	T	V	N	K	E	T	L	N	P	L	A	S	D	V	I	R	K	E	Y	G	E	L	Y	T	A	F	A	A	A	M	K	P	Y	K	D	V	I	A	K	I	Y	L	S	G	G	P	A	G	E	L	R	Y	P	S	Y	T	T	S	D	G	T	G
Template Known Secondary structure		G	G	G	G	G		S	S	S		S	S				T	T						S	S			T	T																				T	G	G	G	G	G	G	B								S	G	G	G	B	S	S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	N	E	S	G	H	G	A	N	H	D	A	L	Y	R	W	I	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	S	R	G	K	F	Q	A	Y	T	E	F	A	K	S	K	F	R	L
Template Known Secondary structure		T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions