Job Description P00722 Confidence 25.59% Date Thu Jan 5 10:56:50 GMT 2012 Rank 250 Aligned Residues 98 % Identity 15% Template d1pgsa2 SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) PHM/PNGase F Glycosyl-asparaginase Resolution 1.80

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																		.	.	.	.	.	.	.	.	160
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	T	F	N	V	D	E	S	W	L	Q	E	G	Q	T	R	I	I	F	D	G	V	N	S	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	W	C	N	G	R	W	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		K	K	N	I	Q	L	P	T	N	.	T	E	K	A	Y	L	R	T	T	I	S	G	W	G	H	A	K	P	Y	D	A	G	S	R	G	C	A	E	W	C	F	R	T	H	T	I	A	I	N	N	A	N	T	F	Q	H	Q	L	G	A	L	G	C	S	A	N	P	I	N	N	Q	S	P	G	N	W	T	P	D	R
Template Known Secondary structure									T	T	.		S																			T	T	T					T	T	S									T	T													G	G	G		S					T	T	S			S	S
Template Predicted Secondary structure											.
Template SS confidence
		170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
			161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																						.
Query SS confidence		.																						.
Query Sequence		.	G	Y	G	Q	D	S	R	L	P	S	E	F	D	L	S	A	F	L	R	A	G	.	E	N	R	L	A	V	M	V	L	R	W	S	D	G	S	Y	L	E	D	Q	D	M	W	R	M	S	G	I	F	R	D	V	S	L	L	H	K	P	T	T	Q	I	S	D	F	H	V	A
Query Conservation		.																						.
Alig confidence		.																						.								.																			.	.	.	.	.
Template Conservation																																.																			.	.	.	.	.
Template Sequence		A	G	W	C	P	G	M	A	V	P	T	R	I	D	V	L	N	N	S	L	T	G	S	T	F	S	Y	E	Y	K	.	F	Q	S	W	T	N	N	G	T	N	G	D	A	F	Y	A	I	S	.	.	.	.	.	S	F	V	I	A	K	S	N	T	P	I	S	A	P	V	V	T
Template Known Secondary structure		S	S			T	T	S											G	G	G	T	T	S								.								S	S	S									.	.	.	.	.								S	S
Template Predicted Secondary structure																																.																			.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions