Job Description P00722 Confidence 99.85% Date Thu Jan 5 10:56:50 GMT 2012 Rank 45 Aligned Residues 274 % Identity 17% Template c3thdD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin Resolution 1.79 Å

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		334	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.	.
Predicted Secondary structure							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	V	R	I	.	.	E	N	G	L	L	L	L	N	G	K	P	L	L	I	R	G	V	N	R	H	E	H	H	P	L	H	G	Q	V	M	D	E	Q	T	M	V	Q	D	I	L	L	M	K	Q	N	N	F	N	A	V	R	C	.	.	.	.	.	S	H	Y	P	N	H	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																							.	.	.	.	.	.																									.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		R	M	F	E	I	D	Y	S	R	D	S	F	L	K	D	G	Q	P	F	R	Y	I	S	G	S	I	H	Y	S	.	.	.	.	.	.	R	V	P	R	F	Y	W	K	D	R	L	L	K	M	K	M	A	G	L	N	A	I	Q	T	Y	V	P	W	N	F	H	E	P	W	P	G	Q	Y	Q	F	S	E	D	H	D
Template Known Secondary structure								T	T	T	T					T	T												G	G	.	.	.	.	.	.	G	S		G	G	G											T	T		S													S	B	T	T	B				S	G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
			397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.														.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.						.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure		.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query SS confidence		.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query Sequence		.	P	L	W	Y	T	L	C	D	R	Y	G	L	Y	V	V	D	E	A	N	I	E	T	H	G	M	V	P	M	N	R	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	P	R	W	L	P	A	M	S	E	R	V	T	R	M	V	Q	R	.	.	.	.	.	D	R	N	H	P	S	V	I	I	W
Query Conservation		.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Alig confidence		.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation
Template Sequence		V	E	Y	F	L	R	L	A	H	E	L	G	L	L	V	I	L	R	P	G	P	Y	I	C	A	E	W	E	M	G	G	L	P	A	W	L	L	E	K	E	S	I	L	L	R	S	S	D	P	D	Y	L	A	A	V	D	K	W	L	G	V	L	L	P	K	M	K	P	L	L	Y	Q	N	G	G	P	V	I	T	V
Template Known Secondary structure												T	T									S				T	T	B	G	G	G	G			G	G	G	G	G	S	T	T			S	S	S																					G	G	G	B	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		458	.	460	.	.	.	.	.						.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure										.	.	.	.	.															.	.
Query SS confidence										.	.	.	.	.															.	.
Query Sequence		S	L	G	N	E	S	G	H	.	.	.	.	.	G	A	N	H	D	A	L	Y	R	W	I	K	S	V	.	.	D	P	S	R	P	V	Q	Y	E	G	G	G	A	D	T	T	A	T	D	I	I	C	P	M	Y	A	R	V	D	E	D	Q	P	F	P	A	V	P	K	W	S	I	K	K	W	L	S	L	P	G	E
Query Conservation										.	.	.	.	.															.	.
Alig confidence										.	.	.	.	.															.	.																															.	.	.
Template Conservation																																																													.	.	.
Template Sequence		Q	V	E	N	E	Y	G	S	Y	F	A	C	D	F	D	Y	L	R	F	L	Q	K	R	F	R	H	H	L	G	D	D	V	V	L	F	T	T	D	G	A	H	K	T	F	L	K	C	G	A	L	Q	G	L	Y	T	T	V	D	F	.	.	.	G	T	G	S	N	I	T	D	A	F	L	S	Q	R	K	C	E	P
Template Known Secondary structure				S	S		G	G	G	S	S																				S	S	S								S	S										T	T	S							.	.	.		T	T	S														S
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600										.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.
Query Sequence		T	R	P	L	I	L	C	E	Y	A	H	A	M	G	N	S	L	G	G	F	A	K	Y	W	Q	A	F	R	Q	Y	P	R	L	Q	G	G	F	V	W	D	W	V	D	Q	S	L	I	K	Y	D	E	N	G	N	P	W	S	A	Y	G	G	D	F	G	D	T	P	N	D	R	.	.	.	.	.	.	.	.	.	Q
Query Conservation																																																																								.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.																									.	.	.	.	.
Template Sequence		K	G	P	L	I	N	S	E	F	Y	T	G	W	L	D	H	W	G	Q	.	.	.	.	.	P	H	S	T	I	K	T	E	A	V	A	S	S	L	Y	D	I	L	A	R	G	A	S	V	.	.	.	.	.	N	L	Y	M	F	I	G	G	T	N	F	A	Y	W	N	G	A	N	S	P	Y	A	A	Q	P	T	S
Template Known Secondary structure		S	S									S	S					T	T	S	.	.	.	.	.																				T	T				.	.	.	.	.					S	B			B			T	T		B				T	T	T					S	B
Template Predicted Secondary structure																					.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	C	M	N	G	L	V	F	A	D	R	T	P	H	P	A	L	T	E	A	K	H	Q	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	Y	D	A	P	L	S	E	A	G	D	L	T	E	K	Y	F	A	L	R	N	I	I	Q
Template Known Secondary structure				T	T		S	B		T	T			B
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions