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Job DescriptionP00722
Confidence100.00%DateThu Jan 5 10:56:50 GMT 2012
Rank3Aligned Residues966
% Identity32%Templatec3obaA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80 ........
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Query Sequence  VLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLP. . EADTVVVP
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Template Sequence  CLIPENLRNPKKVHENRLPTRAYYYD. . . . . . . . . . . . QDIFESLNGPWAFALFDAPLDAPDAKNLDWETAKKWSTISVP
Template Known Secondary structure  TTS
GGGS
TT

SB








............TTT

SSGGGS

TTS

TTS
S
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   3......10.........20........ .30.........40.........50.........60.........70
 
   8990.... .....100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  SNWQMH. . . GYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQD
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Template Sequence  SHWELQEDWKYGKPIYTNVQYPIPIDIPNPPTVNPTGVYARTFELDSKSIESFEHRLRFEGVDNCYELYVNGQYVGFNKG
Template Known Secondary structure 

TTSSGGGTT


SSS
SS

BTTB

SS


S
STT
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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   166...170.........180.........190.........200.........210......... 220.........230.. .......240...
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Query Sequence  SRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKP. TTQISDFHVATRF. NDDFSRAVLEA
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Template Sequence  SRNGAEFDIQKYVSEGENLVVVKVFKWSDSTYIEDQDQWWLSGIYRDVSLLKLPKKAHIEDVRVTTTFVDSQYQDAELSV
Template Known Secondary structure  TTS

TTT

SS

GGGGGB

S


S
SSSSTT

S
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   151........160.........170.........180.........190.........200.........210.........220.........230
 
   244.....250.........260........ .270.........280.........290.........300.........310...
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Query Sequence  EVQMCGELRDYLRVTVSLWQGETQV. . . . . . . . . . ASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAV
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Template Sequence  KVDVQGSSYDHINFTLYEPEDGSKVYDASSLLNEENGNTTFSTKEFISFSTKKNEETAFKINVKAPEHWTAENPTLYKYQ
Template Known Secondary structure  S




B
TT
B





SS







TTS
SSS

BB
SSSB
B
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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  VELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHY
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Template Sequence  LDLIGSDGSVIQSIKHHVGFRQVELKDGNITVNGKDILFRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHY
Template Known Secondary structure 
TTS

B

TTTT





BTTTBT


TT


TTS
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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   394.....400.........410.........420.. .......430.........440.........450
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Query Sequence  PNHPLWYTLCDRYGLYVVDEANIETHGMV. . . . . . . . . . . . . . . . . . . . . . . PMNRLTDDPRWLPAMSERVTRMVQRDRN
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Template Sequence  PNHPKVYDLFDKLGFWVIDEADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDVN
Template Known Secondary structure 


TTT

S
B
GGGGTT




TTTTTTTGGGTTT
GGGTT
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   391........400.........410.........420.........430.........440.........450.........460.........470
 
   451........460.........470.........480.........490.........500.........510.........520.........530
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Query Sequence  HPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGE
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Template Sequence  HPSIIIWSLGNEACYGRNHKAMYKLIKQLDPTRLVHYEG. DLNALSADIFSFMYPTFEIMERWR. . . . . . KNHTDENGKF
Template Known Secondary structure 
TT

BS




TTS
TT.
TT
TT
SSS

......B
TTS
B
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   471........480.........490.........500......... 510.........520.........530... ......540...
 
   531........540.........550.........560.........570.........580.... .....590.........600.....
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Query Sequence  TRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGN. . . . . PWSAYGGDFGDTPNDRQFCMN
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Template Sequence  EKPLILCEYGHAMGNGPGSLKEYQELFYKEKFYQGGFIWEWANHGIEFEDVSTADGKLHKAYAYGGDFKEEVHDGVFIMD
Template Known Secondary structure  SS
S


SS




TTS
SB



TTTSS
TTTT

SS

GGGG

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   544.....550.........560.........570.........580.........590.........600.........610.........620...
 
   606...610.........620.........630.........640.........650.........660.........670.........680.....
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Query Sequence  GLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPE
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Template Sequence  GLCNSEHNPTPGLVEYKKVIEPVHIKIAHGSVTITNKHDFITTDHL. . LFIDKDTGKTIDVP. . . . SLKPEESVTIPSDT
Template Known Secondary structure 
SB
TTS
B
T
STT

SS

STT..TTT




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   624.....630.........640.........650.........660......... 670.........680... ......690.......
 
   686...690.........700.........710.........720.........730.........740.........750.........760.....
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Query Sequence  LPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGF
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Template Sequence  T. . . . . . . . . . . YVVAVLKDDAGVLKAGHEIAWGQAELPLKVPDFVTETAEKAAKINDGKRYVSVESSGLHFILDKLLGK
Template Known Secondary structure  S...........SS
BBTB
TT














S




SSTTTTTT
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   698 .700.........710.........720.........730.........740.........750.........760......
 
   766...770........ .780.........790.........800.........810.........820.........830.... .....840.
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Query Sequence  LSQMWIGDKKQLL. . TPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADA. . VLITTAH
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Template Sequence  IESLKVKGKEISSKFEGSSITFWRPPTNNDEPRD. . . . . . . . . . FKNWKKYNIDLMKQNIHGVSVEKGSNGSLAVVTVNS
Template Known Secondary structure  TT

SS
S





TTTTTT..........TTGGG

SS
S
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   767..770.........780.........790.........800 .........810.........820.........830......
 
   842..... ..850.........860... ......870.........880.........890.........900.........910.........
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Query Sequence  AWQHQG. KTLFISRKTYRIDGSG. QMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRW
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Template Sequence  RISPVVFYYGFETVQKYTIFANKINLNTSMKLTGEYQPPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFGLY
Template Known Secondary structure  TT
S

SSSSS

SB
S
TT
SS

BTTB
TTS
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   837..840.........850.........860.........870.........880.........890.........900.........910......
 
   920.........930.........940.........950.... .....960.........970.........980.........990...
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Query Sequence  DLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRG. . . . . . DFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMG
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Template Sequence  DSKDVEEF. VYDYPQENGNHTDTHFLNIKFEGAGKLSIFQKEKPFNFKISDEYGVDEAAHACDVKRYGRHYLRLDHAIHG
Template Known Secondary structure  GGG



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SS

S


STTTSSS

TTT
SSGGG


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   917..920.... .....930.........940.........950.........960.........970.........980.........990.....
 
   994.....1000.........1010.........1020....
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Query Sequence  IGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK
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Template Sequence  VGS. EACGPAVLDQYRLKAQDFNFEFDLAFE
Template Known Secondary structure 


.GGGS



GGGS
BS


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   996.. .1000.........1010.........1020.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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