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Job DescriptionP00722
Confidence100.00%DateThu Jan 5 10:56:50 GMT 2012
Rank9Aligned Residues526
% Identity27%Templatec3lpgA_
PDB info PDB header:hydrolase/hydrolase inhibitorChain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
Resolution2.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90.........100.........110.........120......
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Query Sequence  RPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSL
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Template Sequence  TPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIR. . . . . . . . . . . . . . . NYAGNVWYQR
Template Known Secondary structure  SS





SSS

TTTTTGGGS

TT
SSS
SSGGGT
...............T

S
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   7..10.........20.........30.........40.........50.........60. ........70.
 
   127..130.........140.........150.........160.........170.........180.. .......190.........
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Query Sequence  TFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAGE. NRLAVMVLRWSDGSYLE. . . . . .
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Template Sequence  EVFIPKGW. AGQRIVLRFDAVTHYGKVWVNNQEVXEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGXVIT
Template Known Secondary structure 

GGG.TTSS

SSSS


SSS

GGG

TTS



TTSSS
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   72....... 80.........90.........100.........110.........120.........130.........140.........150
 
   200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  . . . . . . . . . . DQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVA
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Template Sequence  DENGKKKQSYFHDFFNYAGIHRSVXLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANG. . . . . . DVSVELRDADQQVV
Template Known Secondary structure 
TT

SSSB



S

S

SS

SSSS


SS......
TT

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   151........160.........170.........180.........190.........200.........210 .........220....
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  SGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKP
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Template Sequence  ATGQGTSG. . . . . . . . . . . . . . . TLQVVNPHLWQPGEGYLYELCVTA. . KSQTECDIYPLRVGIRSVAVKGEQFLINHKP
Template Known Secondary structure  SSS
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TTT


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SS




TTTT
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   225....230.. .......240.........250...... ...260.........270.........280.......
 
   350.........360.........370.........380.........390.........400.........410.........420..
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Query Sequence  LLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMV. . . . . . .
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Template Sequence  FYFTGFGRHEDADLRGKGFDNVLXVHDHALXDWIGANSYRTSHYPYAEEXLDWADEHGIVVIDETAAVGFNLSLGIGFEA
Template Known Secondary structure 



S
BTTTBT


T


TTS


T

S
B


S



SSS
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   288.290.........300.........310.........320.........330.........340.........350.........360.......
 
   423......430.........440.........450.........460........ .470.........480.........490.
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Query Sequence  . . . . . . PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGAN. . . . . HDALYRWIKSVDPSRPVQYEGGG
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Template Sequence  GNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVXWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVX
Template Known Secondary structure 



S
SSBTTTB
TT
TT




ST
SSS
B
T
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   368.370.........380.........390.........400.........410.........420.........430.........440.......
 
   492. ......500... ......510.........520.........530.........540 .........
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Query Sequence  AD. . . . . . . TTATDIICPM. . . . . YARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYA. . . . . . . HAMGNSLGG. . .
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Template Sequence  FCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLH. . QPIIITEYGVDTLAGLHSXYTDXWSEEY
Template Known Secondary structure  TS
TTT
SSGGGSSS

BTTTBSTT

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TT


TT

TTS
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   448.450.........460.........470.........480.........490....... ..500.........510.........520.....
 
   550.........560.........570.........580.........590.........600.........610.........620.....
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Query Sequence  . . . . FAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQ
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Template Sequence  QCAWLDXYHRVFDRVSAVVGEQVWNFADFATSQG. . . . . . . . . . . . . . . . . ILRVGGNKKGIFTRDRKPKSAAFLLQKRW
Template Known Secondary structure  TT
TTS
B
B

B.................TTBSSSB


TT

B
T
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   526...530.........540.........550......... 560.........570.........580........
 
   626...630
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Query Sequence  QFFQF
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Template Conservation       
Template Sequence  TGXNF
Template Known Secondary structure  S
T
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   589590...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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