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Job DescriptionP00722
Confidence100.00%DateThu Jan 5 10:56:50 GMT 2012
Rank4Aligned Residues965
% Identity33%Templatec3bgaB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40..... ....50.........60.........70.........80. ......
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Query Sequence  QRRDWENPGVTQLNRLAAHPPFASWRNSEEART. . . DRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPE. . ADTVVV
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Template Sequence  PLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPGGYEQSPYYXSLNGKWKFNWVKNPDNRPKDFYQPSYYTGGWADINV
Template Known Secondary structure 


GGG
SS

BSS









BS
GGGTTSTTGGGGSTT

SGGGS
GGGGSTTS

TTS
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   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   88.90.........100........ .110...... ...120.........130.........140.........150.........
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Query Sequence  PSNWQMHGYDAPIYTNVTYPI. . . . . . . TVNPPFVP. TENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRW
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Template Sequence  PGNWERQGYGTAIYVNETYEFDDKXFNFKKNPPLVPFAENEVGSYRRTFKVPADW. KGRRVVLCCEGVISFYYVWVNGKL
Template Known Secondary structure  SS
GGGGT
S

SSS
TTSSGGGT


BTTB

STT


GGG.TTSS
STT
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   106...110.........120.........130.........140.........150.........160 .........170.........180....
 
   160.........170.........180.........190.........200.........210.........220.........230... .....
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Query Sequence  VGYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFN. DDFSR
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Template Conservation 

   
     




  
  


 


 
    


  
 

     

 


 
   
   
 
  
 
         
Template Sequence  LGYNQGSKTAAEWDITDVLSEGENVVALEVYRWSSGAYLECQDXWRLSGIERDVYLYSTPKQYIADYKVSASLDKEKYKE
Template Known Secondary structure 
SSS

GGG

SSS

GGGGGB

S


S

SS
TTTS
S
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  AVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHT
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Template Sequence  GIFNLEVTVEGPSATASSIAYTLKDASGKAVLQD. . . . AINIKSRGLSNFIAFDEKKIAEVKAWNAEHPNLYTLVLELKD
Template Known Secondary structure  S

SS

TTS
....

SSS


TT

BB
SSSB


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   265....270.........280.........290........ .300.........310.........320.........330.........340
 
   319320.........330.........340.........350.........360.........370.........380.........390........
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Query Sequence  ADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL
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Template Sequence  AQGKVTELTGCEVGFRTSEIKDGRFCINGVPVLVKGTNRHE. HSQLGRTVSKELXEQDIRLXKQHNINXVRNSHYPTHPY
Template Known Secondary structure  TTS

B

TTTT




.
BTTBS


TT


TTS


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   341........350.........360.........370.........380. ........390.........400.........410.........
 
   399400.........410.........420..... ....430.........440.........450.........460.........470.......
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Query Sequence  WYTLCDRYGLYVVDEANIETHGMVPMN. RLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIK
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Template Sequence  WYQLCDRYGLYXIDEANIESHGXGYGPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGNEAGNGINFERTYDWLK
Template Known Secondary structure  T

S
B
GGG
SSTT
TTT
GGGTT
TT

SSS

S
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   420.........430.........440.........450.........460.........470.........480.........490.........
 
   478.480.........490.........500.........510.........520.........530.........540.........550.......
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Query Sequence  SVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAF
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Template Sequence  SVEKGRPVQYER. AELNYNTDIYCRXYRSVDEIKAYVG. . . . . . . . . . . KKDIYRPFILCEYLHAXGNSCGGXKEYWEVF
Template Known Secondary structure 
SSS

GG.GTTSSS
SSB

TT

T...........STT

S
S


SS

TT
Template Predicted Secondary structure 





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   500.........510. ........520.........530...... ...540.........550.........560.......
 
   558.560.........570.........580.........590...... ...600.........610.........620.........630..
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Query Sequence  RQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDT. . PNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRL. . .
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Template Sequence  ENEPXAQGGCIWDWVDQNFREIDKDGKWYWTYGGDYGPEGIPSFGNFCGNGLVNAVREPHPHLLEVKKIYQNIKATLSDR
Template Known Secondary structure 
TTS
SB




TTS


TTSSSSTT

B
GGGG


SB
TT

B

ST
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   568.570.........580.........590.........600.........610.........620.........630.........640.......
 
   633......640.........650......... 660.........670.........680.........690.........700.........710.
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Query Sequence  SGQTIEVTSEYLFRHSDNELLHWMVAL. DGKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSE
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Template Conservation      
 
 
   
  
      
 
    
 
         
 
  
  
            
  
 
            
Template Sequence  KNLKVCIKNWYDFSNLNEYILRWNVKGEDGTVLAEGTKEVDCEPHATVDVTLGAVKLPNTVREAYLNLSWSRKEATPLVD
Template Known Secondary structure  TTT

SS

GGGTT






TT







TT
SSS

SSS
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   648.650.........660.........670.........680.........690.........700.........710.........720.......
 
   712.......720.........730.........740.........750.........760.........770.........780.........790.
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Query Sequence  AGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLD
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Template Sequence  TDWEVAYDQFVLAGNKNTTAYRP. . . . . . . . . . . . . . . QKAGETAFVVDKNTGALSSLTLDGKELLAAPITLSLFRPATD
Template Known Secondary structure  TTS



TT

TTS
...............


S

TTT

TT

S





T
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   728.730.........740.........750 .........760.........770.........780.........790..
 
   792.......800.........810.........820.........830.........840.........850.........860.........870.
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Query Sequence  NDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDV
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Template Sequence  NDNRDRNGA. . . . . . . . RLWRKAGLNNLTQKVVSLKEEKTSATVRAEILNGK. . . GQKVGXADFVYALDKNGALKVRTTF
Template Known Secondary structure  TTTT
TTS........TTTTS

SS
TT...S

TTS
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   793......800. ........810.........820.........830...... ...840.........850.........860.
 
   872.... ...880.........890.........900.........910.........920.........930.........940.........950
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Query Sequence  EVASD. TPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPH
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Template Sequence  QPDTAIVKSXARLGLTFRXADAYNQVSYLGRGDHETYIDRNQSGRIGLYDTTVERXFHYYATPQSTANRTDVRWAKLTDQ
Template Known Secondary structure 
TTT
S

STT

SS

BTTB
SSS



SS






T
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   862.......870.........880.........890.........900.........910.........920.........930.........940.
 
   951... .....960.........970.........980.........990.........1000.........1010.........1020..
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Query Sequence  QWRG. . . . . . . DFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWC
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Template Sequence  AGEGVFXESNRPFQFSIIPFSDVLLEKAHHINELERDGXITIHLDAEQAGVG. TATCGPGVLPQYLVPVKKQSFEFTLY
Template Known Secondary structure  TS
SS

SSGGG



S


T.TTTSS

S
GGGS


S
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   942.......950.........960.........970.........980.........990... ......1000.........1010.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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