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Job DescriptionP00722
Confidence100.00%DateThu Jan 5 10:56:50 GMT 2012
Rank11Aligned Residues668
% Identity17%Templatec2vzvB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70.........80. ........90.........100.........110.........120......
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Query Sequence  SQQLRSLNGEWRFAWFPAPEAVPESWLECDLPE. . ADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSL
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Template Sequence  AGNATPIPG. YVIQSSAQV. SDDSAVSKPGFPTSGWYPVSSRSTVYAGLLQNGKYADPFYSTNMQNVPAAQFSVPWWYRT
Template Known Secondary structure  TT

.GGG
.S
GGGTTSTT


TT
SSTT
S

TTSTTGGGGS
SGGGGS
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   48.50...... ...60..... ....70.........80.........90.........100.........110.........120.....
 
   127..130.........140.........150.........160.. .......170.........180.........190.........200.
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Query Sequence  TFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY. . . GQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQ. .
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Template Sequence  DLNVDD. . . TSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVAFKVYPNDPNRDLSMGWI
Template Known Secondary structure  S
...TTS

SBTT
TTTSBSTT


TTT

S



TTTSSS


T
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   126...130. ........140.........150.........160.........170.........180.........190.........200..
 
   202.... ...210.........220.........230.........240.........250.........260.........270......
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Query Sequence  DMWRM. . . . . SGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFG
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Template Sequence  DWAQTPPDQNMGIVRDVLVRRSGAVALRSAHVIQKLNSALDHADLTVKADVRNDSANAVQTTVAGTVAGKPISQTVSLAA
Template Known Secondary structure  TTS


TTTT

S
SS
TTSS
SSS
TT
T
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   203......210.........220.........230.........240.........250.........260.........270.........280..
 
   277..280.........290.........300.... .....310.........320.........330......... 340........
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Query Sequence  GEIIDERGGYADRVTLRLNVENPKLWSA. . . EIPNLYRAVVELHTADGTLIEAEACDVGFREVRIE. . . . . NGLLLLNGK
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Template Sequence  KERKTVTFP. . . . . . . LVGLDRPNVWWPAGMGGQHRYDLDLTAS. VGGTPSDAAKSKFGVRDVKATLNSSGGRQYSVNGK
Template Known Secondary structure  T


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S





TTSS



.TT




TTS
TT
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   283......290. ........300.........310......... 320.........330.........340.........350....
 
   349350.........360.........370.........380.........390.........400.........410.........420....
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Query Sequence  PLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPM. . . .
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Template Sequence  PLLIRGGGYT. . . PDLFLRWNETAAADKLKYVLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEE
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TT



TT

S



T


SSSGGGTTT
TTS
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   355....360.... .....370.........380.........390.........400.........410.........420.........430.
 
   425....430.........440.........450.........460.........470... ......480.........490.........500...
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Query Sequence  NRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALY. RWIKSVDPSRPVQYEGGGADTTATDIICPM
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Template Sequence  KGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADFLLPVIPAASARPSPITGA. . . .
Template Known Secondary structure  SS



TTTT
TTB

S
SSS


TT

S
S
SSS

BTTTB
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   432.......440.........450.........460.........470.........480.........490.........500.......
 
   504.....510.........520.........530.........540 .........550
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Query Sequence  YARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HAMGNSLGGF
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Template Sequence  . SGMKMNGPYDYVPPVYWYDKSQKDRGGAWSFNSATSAGVDIPTMDTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNL
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S


GGGGG

S
TTS
SSS

SB



S

TTSB
TTS
SSGGGSB
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   508.510.........520.........530.........540.........550.........560.........570.........580......
 
   551... .....560.........570........ .580.........590.........600.........610..
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Query Sequence  AKYW. . . . . . . . . . . . . . QAFRQYPRLQGGFVWDWVDQSLIK. . . . YDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADR
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Template Sequence  KLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFESHSRNYTDSTNPSTGLIYWMLNSPWTSL. . . . . . HWQLFDAYM
Template Known Secondary structure 



STT
SSS
S
S

SSS
S......BS
SB
TT
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   587..590.........600.........610.........620.........630.........640.........650. ........660
 
   613......620.........630.. .......640.........650......... 660.........670. ........680........
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Query Sequence  TPHPALTEAKHQQQFFQFRL. . SGQTIEVTSEYLFRHSDNELLHWMVAL. DGKPLASGEVPL. DVAPQGKQLIELPELPQ
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Template Sequence  DQNGAYYGAKKANEPLHIQYSHDNRSVVVINQTS. NAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATAVTVPAV
Template Known Secondary structure 
B
T
S
TTT

SS.S
TTS

SSS



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   661........670.........680.........690.... .....700.........710.........720.........730.........
 
   689690.........700.........710.........720........ .730.........740...
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Query Sequence  PESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLS. . . . . . . . . . . . . . . . . . . . . . . . . VTLPAASHAIPHLTT
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Template Sequence  SGLSTTYLAKNVLT. . . . . . . DSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLSGLNNLGQSAVGATANSVAG
Template Known Secondary structure  TT

S.......
TT

SS


GGG

SS






GGGGG





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   740.........750... ......760.........770.........780.........790.........800.........810..
 
   744.....750.
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Query Sequence  SEMDFCIE
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Template Conservation         
Template Sequence  ADGTTTTT
Template Known Secondary structure  TTS
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   813......820
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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