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Job DescriptionP00722
Confidence100.00%DateThu Jan 5 10:56:50 GMT 2012
Rank5Aligned Residues952
% Identity35%Templatec1yq2C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60....... ..70.........80. .
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Query Sequence  WENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAP. . . . . . . . . . . . EAVPESWLECDLPE. . A
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Template Sequence  LTDQGPGSGRRVPARSWLHS. . . . . . . . . . . . DAPALSLNGDWRFRLLPAAPGTAGAGSVLPSGETVEGVAAESYDDAAW
Template Known Secondary structure  GT

SS
SB






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S


SS
TTSGGGTT
S
TT

TTGGGSTT


TT
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   910.........20........ .30.........40.........50.........60.........70......
 
   83......90... ......100.........110.........120.........130..... ....140.........150.......
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Query Sequence  DTVVVPSNWQM. . . HGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWL. . QEGQTRIIFDGVNSAFHLWCNG
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Template Sequence  DTLPVPSHWVMGQDGKYGRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFDGVESRYKVWVNG
Template Known Secondary structure  SS
TTSSSTTTT


SSS
SS
S
TT


S



GGGGSTTS
STT
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  RWVGYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFS
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Template Sequence  QEIGVGSGSRLAQEFDVSDALRAGSNLLVVRVHQWSAASYLEDQDQWWLPGIFRDVTLQARPAGGITDAWLRTGWSARSG
Template Known Secondary structure 
TTS

TTT

SSS
GGGGGB

S


S
TT


ST
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  RAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELH
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Template Sequence  AGTGTIDPEITADATA. FPVTLSVPELGVNVTWKSAEEVA. . . . . . . . . . . . . . . PLALENVEPWSAEVPRLYEASVSS.
Template Known Secondary structure  T

GGG.
SGGGTSSGGG

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SS


B
SSSB


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   237..240.........250.. .......260.........270..... ....280.........290.........
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  TADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHP
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Template Sequence  . . . . . AAESISVRLGFRTVRIVGDQFLVNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTSHYPPHP
Template Known Secondary structure  .....SS




TTTT





TTTTT


TT

TTS


T
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   300.........310.........320.........330.........340.........350.........360.........370....
 
   398.400.........410.........420... ......430.........440.........450.........460.........470....
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Query Sequence  LWYTLCDRYGLYVVDEANIETHGMVP. . . MNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYR
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Template Sequence  RLLDLADEMGFWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAA
Template Known Secondary structure  T

S
B
GGGTTTTTTT
GGG
GGGTT
TT

SS



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   375....380.........390.........400.........410.........420.........430.........440.........450....
 
   475....480.........490.........500.........510..... ....520.........530.........540.........550
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Query Sequence  WIKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPA. . . . VPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGF
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Template Sequence  WAHARDSSRPVHYEG. DYTGAYTDVYSRMYSSIPETDSIGRNDSHALLLGCDSAESARQRTKPFILCEYVHAMGNGPGAM
Template Known Secondary structure 
TTS

TT.
TT
SS
SSS


SS




TT

TTS
S


SS



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   455....460......... 470.........480.........490.........500.........510.........520.........530...
 
   551........560.........570.........580.........590.........600.........610.........620.........630
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Query Sequence  AKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQF
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Template Sequence  DQYEALVDKYPRLHGGFVWEWRDHGIRTRTAEGMEFFAYGGDFGEVVHDSNFVMDGMVLSDSTPTPGLYEFKQIVSPIRL
Template Known Secondary structure 
TTS
SB



TT


TTTT

SS

GGGG


SB
TTS
B
T
S
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   534.....540.........550.........560.........570.........580.........590.........600.........610...
 
   631.. ......640.........650.........660.........670. ........680.........690.........700
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Query Sequence  RLS. . . . . GQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPL. . . . . DVAPQGKQLIELPELPQPESAGQLWLTVR
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Template Sequence  GLSLPAGGKPTLAVANLRHTADASDVVLRWRVEHDGAVAASGEVAAEGSDGPLRAGESATIALPAMPAA. PLGETWLTVE
Template Known Secondary structure 

TTS



SS

GGGTT
B
SSSB

TT







.SSS
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   614.....620.........630.........640.........650.........660.........670.........680.. .......690..
 
   701........710.........720.........730.........740.........750.........760.........770.........780
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Query Sequence  VVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTP
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Template Sequence  AVLRDATGWAPAGHPLGAVQLDLSAPA. . . VPTRSPRPATPLDGALPVSLGPATFD. . . . . . AGTLVSL. . AGQPV. . SG
Template Known Secondary structure  SS

SSS
TT





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BSS


STT......TT..TT
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   693......700.........710......... 720.........730.........740..... ....750.. ..... ..
 
   781........790.........800.........810 .........820.........830.........840........
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Query Sequence  LRDQFTRAPLDNDIGVSEATRIDPNAWVER. . . . . . . . . . . . WKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGK
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Template Sequence  PRLELWRAPTDNDRGAGFGAYGPGDPWLNSGRGVPAPSSEAVWKQAGLDRLTRRVEDVAAL. . PDGIRVRTRYAAAD. ST
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TGGG

SS
BSTTS
TTSGGGT
B



TTGGG..TTTT.
S
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   760.........770.........780.........790.........800.........810.........820 .........830.... ..
 
   849850.........860.........870........ .880.........890.........900.........910.........920.......
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Query Sequence  TLFISRKTYRIDGSGQMAITVDVEVASDTP. HPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMY
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Template Sequence  HSVAVEENWQLD. GGELCLRIDITPSAGWNLVWPRIGVRWDLPTDVDGAAWFGAGPRESYPDSMHATMVARHAASLEELN
Template Known Secondary structure 

.TT
TT

S

S
TTSS

BTTB
TT
S
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   837..840........ .850.........860.........870.........880.........890.........900.........910.....
 
   928.930.........940.........950.... .....960.........970.........980.........990.....
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Query Sequence  TPYVFPSENGLRCGTRELNYGPHQWRG. . . . . . . . . . . . DFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIG
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Template Sequence  VPYARPQETGHRSDVRWLELDRAGAPWLRIDAEPDAAGRRPGFSLARHTAQEIAAAGHPHELPTPSHSYLYVDAAQHGLG
Template Known Secondary structure 


SS

S


B
S
STT

TTS


SS

SSGGGS








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   916...920.........930.........940.........950.........960.........970.........980.........990.....
 
   996...1000.........1010.........1020..
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Query Sequence  GDDSWSPSVSAEFQLSAGRYHYQLVWC
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Template Sequence  . SRACGPDVWPDFALRPEARTLKLRIS
Template Known Secondary structure  .
GGGS



GGG





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   996...1000.........1010.........1020.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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