Job Description P0AG55 Confidence 100.00% Date Thu Jan 5 11:28:10 GMT 2012 Rank 1 Aligned Residues 175 % Identity 45% Template c3bboI_ PDB info PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein l6; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		S	R	V	A	K	A	P	V	V	V	P	A	G	V	D	V	K	I	N	G	Q	V	I	T	I	K	G	K	N	G	E	L	T	R	T	L	N	D	A	V	E	V	K	H	.	A	D	N	T	L	T	F	G	P	R	D	G	Y	A	D	G	W	A	Q	A	G	T	A	R	A	L	L	N	S	M	V	I	G	V	T
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		S	R	I	G	K	Q	P	I	A	V	P	S	N	V	T	I	A	L	E	G	Q	D	L	K	V	K	G	P	L	G	E	L	A	L	T	Y	P	R	E	V	E	L	T	K	E	E	S	G	F	L	R	V	K	K	T	V	E	T	R	R	A	N	Q	M	H	G	L	F	R	T	L	T	D	N	M	V	V	G	V	S
Template Known Secondary structure												S	T	T	S					S	S	S							S	S									S	S							S	S	S							S	S			T	T									T	T	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	F	T	K	K	L	Q	L	V	G	V	G	Y	R	A	A	V	K	G	N	V	I	N	L	S	L	G	F	S	H	P	V	D	H	Q	L	P	A	G	I	T	A	E	C	P	T	Q	T	E	I	V	L	K	G	A	D	K	Q	V	I	G	Q	V	A	A	D	L	R	A	Y	R	R	P	E	P	Y	K	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	F	E	K	K	L	I	L	V	G	V	G	Y	R	A	T	V	D	G	K	E	L	V	L	N	L	G	F	S	H	P	V	K	M	Q	I	P	D	S	L	K	V	K	V	E	E	N	T	R	I	T	V	S	G	Y	D	K	S	E	I	G	Q	F	A	A	T	V	R	K	W	R	P	P	E	P	Y	K	G	K
Template Known Secondary structure		T										S	T	T							S	S						S	S		S	S								S	S						S	S	T	T	B						S	S	S										T	T	S	S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	R	Y	A	D	E	V	V	R	T	K	E	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	K	Y	S	D	E	I	V	R	R	K	E	G	K	A
Template Known Secondary structure		S				T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions