Job Description P0AG55 Confidence 100.00% Date Thu Jan 5 11:28:10 GMT 2012 Rank 8 Aligned Residues 161 % Identity 25% Template c2zkre_ PDB info PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es7 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																.												.	.	.
Query SS confidence																																.												.	.	.
Query Sequence		V	V	V	P	A	G	V	D	V	K	I	N	G	Q	V	I	T	I	K	G	K	N	G	E	L	T	R	T	L	N	.	D	A	V	E	V	K	H	A	D	N	T	.	.	.	L	T	F	G	P	R	D	G	Y	A	D	G	W	A	Q	A	G	T	A	R	A	L	L	N	S	M	V	I	G	V	T	E	G	F	T
Query Conservation																																.												.	.	.
Alig confidence																																.												.	.	.
Template Conservation
Template Sequence		V	D	I	P	E	N	V	D	I	T	L	K	G	R	T	V	I	V	K	G	P	R	G	T	L	R	R	D	F	N	H	I	N	V	E	L	S	L	L	G	K	K	K	K	R	L	R	V	D	K	W	W	G	N	R	K	E	L	A	T	V	R	T	I	C	S	H	V	Q	N	M	I	K	G	V	T	L	G	F	R
Template Known Secondary structure						T	T							T	T							T	T									S	S	S							T	T	T	T								S																										T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																				.	.
Query SS confidence																			.	.	.	.	.	.																				.	.
Query Sequence		K	K	L	Q	L	V	G	V	G	Y	R	A	A	V	K	G	N	.	.	.	.	.	.	V	I	N	L	S	L	G	F	S	H	P	V	D	H	Q	L	P	A	G	.	.	I	T	A	E	C	P	T	Q	T	E	I	V	L	K	G	A	D	K	Q	V	I	G	Q	V	A	A	D	L	R	A	Y	R	R	P	E	P
Query Conservation																			.	.	.	.	.	.																				.	.
Alig confidence																			.	.	.	.	.	.																				.	.																													.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		Y	K	M	R	S	V	Y	A	H	F	P	I	N	V	V	I	Q	E	N	G	S	L	V	E	I	R	N	F	L	G	E	K	Y	I	R	R	V	R	M	R	P	G	V	A	C	S	V	S	Q	A	Q	K	D	E	L	I	L	E	G	N	D	I	E	L	V	S	N	S	A	A	L	I	.	.	.	Q	Q	A	T	T
Template Known Secondary structure									S	S	S								T	T		S						S	G	G	G		S	S								S	S							S	S		S	S							S													.	.	.				T
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.
		157	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		Y	K	G	K	G	V	.	.	R	Y	A	D	E	V	V	R	T	K
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		V	K	N	K	D	I	R	K	F	L	D	G	I	Y	V	S	E	K
Template Known Secondary structure			S	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions