Job Description P0AG55 Confidence 100.00% Date Thu Jan 5 11:28:10 GMT 2012 Rank 11 Aligned Residues 164 % Identity 26% Template c1s1iH_ PDB info PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Resolution 11.70 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		K	A	P	V	V	V	P	A	G	V	D	V	K	I	N	G	Q	V	I	T	I	K	G	K	N	G	E	L	T	R	T	L	N	D	A	.	.	V	E	V	K	H	A	D	N	T	L	T	F	G	P	R	D	G	Y	A	D	G	W	A	Q	A	G	T	A	R	A	L	L	N	S	M	V	I	G	V	T	E	G	F
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		E	Q	Q	I	E	V	P	E	G	V	T	V	S	I	K	S	R	I	V	K	V	V	G	P	R	G	T	L	T	K	N	L	K	H	I	D	V	T	F	T	K	V	N	N	Q	L	I	K	V	A	V	H	N	G	G	R	K	H	V	A	A	L	R	T	V	K	S	L	V	D	N	M	I	T	G	V	T	K	G	Y
Template Known Secondary structure									T	T	S						T	T							S	S										S	S								S	S							S			S	T	T	T	S	S	S	S	S						T	T	S	S	S	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																									.	.
Query SS confidence																				.	.	.	.	.	.	.	.																									.	.
Query Sequence		T	K	K	L	Q	L	V	G	V	G	Y	R	A	A	V	K	G	N	.	.	.	.	.	.	.	.	V	I	N	L	S	L	G	F	S	H	P	V	D	H	Q	L	P	A	G	I	T	A	E	C	.	.	P	T	Q	T	E	I	V	L	K	G	A	D	K	Q	V	I	G	Q	V	A	A	D	L	R	A	Y	R	R
Query Conservation																				.	.	.	.	.	.	.	.																									.	.
Alig confidence																				.	.	.	.	.	.	.	.																									.	.																												.
Template Conservation																																																																																	.
Template Sequence		K	Y	K	M	R	Y	V	Y	A	H	F	P	I	N	V	N	I	V	E	K	D	G	A	K	F	I	E	V	R	N	F	L	G	D	K	K	I	R	N	V	P	V	R	D	G	V	T	I	E	F	S	T	N	V	K	D	E	I	V	L	S	G	N	S	V	E	D	V	S	Q	N	A	A	D	L	Q	Q	I	C	.
Template Known Secondary structure							B			S	S	S								S	S	S	T	T	T	T	S					S	S	S		S	S								T	T							S	S	S	S	S							S		T	T	T	S	T	T	T	S	S	S	S	S	T	T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		154	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		P	E	P	Y	K	G	K	G	V	.	.	R	Y	A	D	E	V	V	R	T	K
Query Conservation											.	.
Alig confidence		.	.								.	.
Template Conservation		.	.
Template Sequence		.	.	R	V	R	N	K	D	I	R	K	F	L	D	G	I	Y	V	S	H	K
Template Known Secondary structure		.	.			S	S	S		B	T	T	B			S	B
Template Predicted Secondary structure		.	.
Template SS confidence
				166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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