Job Description P0AG55 Confidence 100.00% Date Thu Jan 5 11:28:10 GMT 2012 Rank 6 Aligned Residues 172 % Identity 39% Template c1pnuE_ PDB info PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l6; PDBTitle: crystal structure of a streptomycin dependent ribosome from2 escherichia coli, 50s subunit of 70s ribosome. this file,3 1pnu, contains only molecules of the 50s ribosomal4 subunit. the 30s subunit, mrna, p-site trna, and a-site5 trna are in the pdb file 1pns. Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	P	V	V	V	P	A	G	V	D	V	K	I	N	G	Q	V	I	T	I	K	G	K	N	G	E	L	T	R	T	L	N	D	A	V	E	V	K	H	A	D	N	T	L	T	F	G	P	R	D	G	Y	A	D	G	W	A	Q	A	G	T	A	R	A	L	L	N	S	M	V	I	G	V	T	E	G	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	Q	P	I	A	V	P	S	G	V	T	V	N	A	Q	D	G	V	F	K	V	K	G	P	K	G	E	L	T	V	P	Y	N	T	E	L	T	V	R	Q	D	G	D	Q	L	L	V	E	R	P	S	D	A	Q	K	H	R	A	L	H	G	L	T	R	T	L	V	A	N	A	V	K	G	V	S	D	G	Y	T
Template Known Secondary structure										S	S						T	T	S			B			S	S	S				B					S	S							T	T							S			S	T	T	T	T	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	L	Q	L	V	G	V	G	Y	R	A	A	V	K	G	N	V	I	N	L	S	L	G	F	S	H	P	V	D	H	Q	L	P	A	G	I	T	A	E	C	P	T	Q	T	E	I	V	L	K	G	A	D	K	Q	V	I	G	Q	V	A	A	D	L	R	A	Y	R	R	P	E	P	Y	K	G	K	G	V	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	L	E	L	R	G	V	G	F	R	A	K	L	T	G	K	A	L	E	M	N	I	G	Y	S	H	P	V	I	I	E	P	P	A	G	V	T	F	A	V	P	E	P	T	R	I	D	V	S	G	I	D	K	Q	L	V	G	Q	V	A	A	N	V	R	K	V	R	K	P	D	A	Y	H	G	K	G	V	R	F
Template Known Secondary structure								S	S							T	T	S	S						S	T	T									S	S				B		S	T	T	T							S														T	S	S				T	T	S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	E	V	V	R	T	K	E	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	E	Q	I	A	L	K	A	G	K	A
Template Known Secondary structure		S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions