Return to main results Retrieve Phyre Job Id

Job DescriptionP06626
Confidence97.38%DateThu Jan 5 10:59:17 GMT 2012
Rank8Aligned Residues46
% Identity28%Templated1yioa1
SCOP infoDNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators)
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   161........170.........180.........190.........200......
Predicted Secondary structure 












Query SS confidence 













































Query Sequence  DVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELI
Query Conservation   

 

  
 

  

  
 
   


     
     
 



  
Alig confidence 













































Template Conservation   

     
 
  


  
 

  

      
  

    
  

Template Sequence  QVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLV
Template Known Secondary structure  TTT

T

TT
SS
Template Predicted Secondary structure 










Template SS confidence 













































   149150.........160.........170.........180.........190....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions