Job Description P06626 Confidence 97.88% Date Thu Jan 5 10:59:17 GMT 2012 Rank 1 Aligned Residues 189 % Identity 14% Template c3cloC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution Resolution 2.04 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.											.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	I	D	L	L	E	N	L	T	A	V	I	Q	D	Y	P	N	P	A	C	I	R	D	.	E	T	G	K	F	I	F	C	N	T	L	F	H	E	S	F	L	T	Q	.	.	.	.	.	.	.	.	.	.	D	Q	S	A	E	K	W	L	L	S	Q	R	D	F	C	E	L	I	S	V	T	E	M	E	A	Y
Query Conservation																										.																				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																			.																				.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		H	Q	.	.	.	.	Q	F	V	R	S	L	T	E	V	N	G	G	C	A	V	I	S	D	L	S	N	R	K	S	Y	V	T	V	H	P	W	A	N	F	L	G	L	T	P	E	E	A	A	L	S	V	I	D	S	X	D	E	D	C	I	Y	R	R	I	H	P	E	D	L	V	E	K	R	L	X	E	Y	K	F
Template Known Secondary structure				.	.	.	.											S								T	T	T	T								T	T		G	G	G												T	T				T					T	T	B
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		82									.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.														.	.	.	.																											.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.														.	.	.	.																											.	.	.	.
Query Sequence		R	.	.	.	.	.	.	.	.	N	E	H	T	H	L	N	L	V	E	D	V	F	.	.	.	.	I	Q	N	R	F	W	T	I	S	V	Q	S	F	L	N	G	H	R	N	I	I	L	W	Q	F	Y	.	.	.	.	D	A	A	H	V	R	H	K	D	S	Y	N	Q	K	T	I	V	S	D	D	I	R	N	I
Query Conservation			.	.	.	.	.	.	.	.														.	.	.	.																											.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.														.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		F	Q	K	T	F	S	X	S	P	G	E	R	L	K	Y	R	G	R	C	R	L	R	X	X	N	E	K	G	V	Y	Q	Y	I	D	N	L	V	Q	I	X	Q	N	T	P	A	G	N	V	W	L	I	F	C	L	Y	S	L	S	A	D	Q	R	P	E	Q	G	I	Y	A	T	I	T	Q	X	E	R	G	E	V	E
Template Known Secondary structure							T	S						T	T												T	T	S																T	T	S													S						S	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		146	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		I	R	R	M	S	D	D	S	S	.	.	V	S	S	Y	V	N	D	V	F	Y	L	Y	S	T	G	I	S	H	N	A	I	A	R	I	L	N	I	S	I	S	T	S	K	K	H	A	S	L	I	C	D	Y	F	S	V	S	N	K	D	E	L
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		T	L	S	L	S	E	E	H	R	N	I	L	S	E	R	E	K	E	I	L	R	C	I	R	K	G	L	S	S	K	E	I	A	A	T	L	Y	I	S	V	N	T	V	N	R	H	R	Q	N	I	L	E	K	L	S	V	G	N	S	I	E	A
Template Known Secondary structure										T	T	S	S														T										T	T																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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