Return to main results Retrieve Phyre Job Id

Job DescriptionP06626
Confidence97.17%DateThu Jan 5 10:59:17 GMT 2012
Rank14Aligned Residues66
% Identity23%Templatec2rnjA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   150.........160.........170.........180.........190.........200.........210.....
Predicted Secondary structure 















Query SS confidence 

































































Query Sequence  SDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFI
Query Conservation        
  
  

 

  
 

  

  
 
   


     
     
 



    
  
   
Alig confidence 

































































Template Conservation 
    

  
  

  
  
    


  
 

  

      
  

   

 


  
   


Template Sequence  ELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI
Template Known Secondary structure 
TGGG

STT

TTT

TT

SST

Template Predicted Secondary structure 

















Template SS confidence 

































































   143......150.........160.........170.........180.........190.........200........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions