Job Description P32716 Confidence 99.95% Date Thu Jan 5 11:50:38 GMT 2012 Rank 2 Aligned Residues 222 % Identity 23% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		41	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		D	A	Y	A	S	A	.	D	T	I	D	V	V	P	E	V	S	G	R	I	V	E	L	A	V	T	D	N	Q	A	V	K	Q	G	D	L	L	F	R	I	D	P	R	P	Y	E	A	N	L	A	K	A	E	A	S	L	A	A	L	D	K	Q	I	M	L	T	Q	R	S	V	D	A	Q	Q	F	G	A	D	S	V
Query Conservation								.
Alig confidence								.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	D	S	A	K	G	D	L	A	K	A	Q	A	A	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S								S	S									S		T	T					T	T	S		S																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	T	V	E	K	A	R	A	A	A	K	Q	A	T	D	T	L	R	R	T	E	P	L	L	K	E	G	F	V	S	A	E	D	V	D	R	A	R	T	A	Q	R	A	A	E	A	D	L	N	A	V	L	L	Q	A	Q	S	A	A	S	A	V	S	G	V	D	A	L	V	A	Q	R	A	A	V	E	A	D	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	T	S	T	T																																				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		A	L	T	K	L	H	L	E	M	A	T	V	R	A	P	F	D	G	R	V	I	S	L	K	T	S	V	G	Q	F	A	S	A	M	R	P	.	.	I	F	T	L	I	D	T	R	H	W	Y	V	I	A	N	F	R	E	T	D	L	K	N	I	R	S	G	T	P	A	T	I	R	L	M	S	D	S	G	K	T	F
Query Conservation																																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.																												.	.																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I	K	F	P	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S		B		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template SS confidence
											174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	V	D	S	I	G	Y	G	V	L	P	D	D	G	G	L	V	L	G	G	L	P	K	V	S	R	S	I	N	W	V	R	V	A	Q	R	F	P	V	K	I	M	V	D	K	P	D	P	E	M	F	R	I	G	A	S	A	V	A	N	L	E
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		D	G	T	L	E	F	S	D	V	T	V	D	Q	T	T	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	L	R	A	I	F	P	N	P	D	.	H	T	X	X	P	G	X	F	V	R	A	R	L	E
Template Known Secondary structure			B			S	S	S						S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	.					S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																						.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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