Job Description P30855 Confidence 99.95% Date Thu Jan 5 11:46:34 GMT 2012 Rank 39 Aligned Residues 225 % Identity 15% Template d1pb7a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.35

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.								.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																	.	.	.	.	110
Predicted Secondary structure																											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	.	.	.	.	.	.	.	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	K	A	M
Query Conservation																											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		S	D	G	T	C	K	E	E	F	.	T	V	N	G	D	P	V	K	K	V	I	C	T	G	P	N	H	T	V	P	Q	C	C	Y	G	F	C	I	D	L	L	I	K	L	A	R	T	M	N	F	T	Y	E	V	H	L	V	A	D	G	K	F	G	T	Q	E	R	V	N	N	S	N	K	K	E	W	N	G	M	M
Template Known Secondary structure		T	T	S	S					B	.		T	T	S		B																			S														T									T	T										T	T	S	S
Template Predicted Secondary structure											.
Template SS confidence
		24	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.																		.	.
Query SS confidence																																																									.	.	.	.	.	.																		.	.
Query Sequence		D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	.	.	.	.	.	.	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	.	.
Query Conservation																																																									.	.	.	.	.	.																		.	.
Alig confidence																																																									.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		G	E	L	L	S	G	Q	A	D	M	I	V	A	P	L	T	I	N	N	E	R	A	Q	Y	I	E	F	S	K	P	F	K	Y	Q	G	L	T	I	L	V	K	K	G	T	R	I	T	G	I	N	D	P	R	L	R	N	P	S	D	K	F	I	Y	A	T	V	K	Q	S	S	V	D	I	Y	F	R	R	Q	V	E
Template Known Secondary structure							T	S		S				S	S		B							T	T					S		S											T	T					S	T	T						S		B	T	T	B					B	T	T	S								T		G	G
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
						183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																									.	.									.																		.
Template Conservation																																														.	.									.																		.
Template Sequence		L	S	T	M	Y	R	H	M	E	K	H	N	Y	E	S	A	A	E	A	I	Q	A	V	R	D	N	K	L	H	A	F	I	W	D	S	A	V	L	E	F	E	A	S	Q	.	.	K	C	D	L	V	T	T	G	.	E	L	F	F	R	S	G	F	G	I	G	M	R	K	D	S	P	.	W	K	Q	N	V	S	L
Template Known Secondary structure		G								T	T	T		B	S	S										T	T	S		S																.	.		T	T					S	.	S		S											T	T		S	.	S
Template Predicted Secondary structure																																														.	.									.																		.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.
		259	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		F	V	D	A	L	.	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		S	I	L	K	S	H	E	N	G	F	M	E	D	L	D	K	T	W	V	R	Y	Q	E	C	D	S
Template Known Secondary structure									S	S										T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions