Job Description P30855 Confidence 99.91% Date Thu Jan 5 11:46:34 GMT 2012 Rank 52 Aligned Residues 214 % Identity 16% Template d1ii5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I
Query Conservation
Alig confidence									.	.										.	.	.
Template Conservation									.	.										.	.	.
Template Sequence		M	A	L	K	V	G	V	.	.	V	G	N	P	P	F	V	F	Y	.	.	.	G	A	F	T	G	I	S	L	D	V	W	R	A	V	A	E	S	Q	K	W	N	S	E	Y	V	R	Q	N	S	I	S	A	G	I	T	A	V	A	E	G	E	L	D	I	L	I	G	P	I	S	V	T	P	E	R	A	A	I	E
Template Known Secondary structure									.	.				T	T	T				.	.	.					S														T									S											T	T	S		S														T	S	T
Template Predicted Secondary structure									.	.										.	.	.
Template SS confidence
		4	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	.	.	.	.	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																													.	.
Template Conservation																																																	.	.
Template Sequence		G	I	T	F	T	Q	P	Y	F	S	S	G	I	G	L	L	I	P	G	T	A	T	P	L	F	R	S	V	G	D	L	K	N	K	E	V	A	V	V	R	D	T	T	A	V	D	W	.	.	A	N	F	Y	Q	A	D	V	R	E	T	N	N	L	T	A	A	I	T	L	L	Q	K	K	Q	V	E	A	V	M	F
Template Known Secondary structure		T																		G	G	G	T	T	T		S	S	G	G	G	G	T	T							T	T	S						.	.				T	T							S	S										T	T	S		S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	.	V	R	Y	E	V	S	Q	N	W	L	D	T
Query Conservation																																																									.
Alig confidence																									.													.																			.
Template Conservation																									.													.
Template Sequence		D	R	P	A	L	I	Y	Y	T	R	Q	N	P	N	L	N	L	E	V	T	E	I	R	.	V	S	L	E	P	Y	G	F	V	L	K	E	.	N	S	P	L	Q	K	T	I	N	V	E	M	L	N	L	L	Y	S	R	V	I	A	E	F	T	E	R	W	L	G	E
Template Known Secondary structure														G	G	G						S			.	S											T	.	T		T	T														T	T
Template Predicted Secondary structure																									.													.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions