Job Description P30855 Confidence 98.84% Date Thu Jan 5 11:46:34 GMT 2012 Rank 232 Aligned Residues 208 % Identity 10% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	.	.	.	.	.	.	.	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																								.																										.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		A	A	T	N	V	L	K	V	V	F	E	K	M	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V
Template Known Secondary structure														T	T									.											T	T	S	S	S								T	T	T	T								G	G	G																			T	T	S
Template Predicted Secondary structure																								.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.												.	.	.	.																							.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.												.	.	.	.																							.	.	.	.	.
Query Sequence		S	M	R	P	L	T	S	P	.	.	.	.	.	.	.	K	P	V	N	I	A	R	V	A	N	Y	.	.	.	.	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	.	.	.	.	.	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S
Query Conservation										.	.	.	.	.	.	.												.	.	.	.																							.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.												.	.	.	.																							.	.	.	.	.																						.	.
Template Conservation																																																																																.	.
Template Sequence		P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	.	.
Template Known Secondary structure					B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S																				T	T										S		T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	.	.	.	.	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	E	H	E
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.													.	.																							.	.	.	.	.	.	.	.
Template Conservation																																															.	.																							.	.	.	.	.	.	.	.
Template Sequence		A	F	S	R	Y	D	I	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y	V	F	D	H	F	.	.	Y	W	S	D	D	L	I	L	P	L	M	D	K	N	D	K	E	P	G	K	E	Y	.	.	.	.	.	.	.	.	R	N	A
Template Known Secondary structure						S						B		T	T		T	T		S	S									T	T																.	.																	S	T	T				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.									.	.	.
		295	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	W	I	K	Q	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	F	V	E	K	N	K
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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