Job Description P30855 Confidence 98.86% Date Thu Jan 5 11:46:34 GMT 2012 Rank 230 Aligned Residues 172 % Identity 11% Template c3rtyA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: structure of an enclosed dimer formed by the drosophila period protein Resolution 2.85 Å

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		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		G	D	L	E	N	Q	I	S	F	R	K	A	L	S	D	S	L	P	N	P	T	Y	V	V	N	W	Q	G	N	V	I	S	H	N	S	A	F	E	H	Y	F	T	A	D	Y	Y	K	N	A	M	L	P	L	E	N	S	D	S	P	F	K	D	V	F	S	N	A	H	E	V	T	A	E	T	K	.	.	.	.	E
Query Conservation																																																																													.	.	.	.
Alig confidence																																																																													.	.	.	.
Template Conservation
Template Sequence		P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G
Template Known Secondary structure						S		S	S	T	T		B			S	S										T	T		B						T	T													T	T	S	B	G	G	G	G	B		G	G	G															T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.																690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	T	I	Y	T	Q	V	F	E	I	D	N	G	I	E	K	R	C	I	N	H	W	H	T	L	C	N	L	P	A	S	D	N	A	V	Y	I	C	G	W	Q	D	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	R	D	L	I	N	A	L	E	V	E	K	N	K	A	I	K	A	T
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	F	C	S	K	P	Y	R	F	L	I	Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q	G	P	K	Q	C	N	V	F	E	A	A	P	T	C	K	L	K	I	S	E	E	A	Q	S	R	N	T	R	I	K	E	D	I	V
Template Known Secondary structure					B									T	T	S															T	T	T		S															S	S	S		S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.					.	730	.	.	.	.	.	.	.	.	.	740
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		V	A	K	S	Q	F	L	A	T	M	S	H	E	I	R	T	P	I	S	.	.	.	.	S	I	M	G	F	L	E	L	L	S	G	S
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		K	R	L	A	E	T	V	S	R	P	S	E	T	V	K	Q	E	V	S	R	R	C	Q	A	L	A	S	F	M	E	T	L	M	D	E
Template Known Secondary structure						S								T	T	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions