Job Description P30855 Confidence 98.17% Date Thu Jan 5 11:46:34 GMT 2012 Rank 281 Aligned Residues 209 % Identity 12% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																										.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	.	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	L	N	N	D	I	A	A	T	K
Query Conservation																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K	D	P	D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D	L	K	W	Y	D	S
Template Known Secondary structure										S	S											S										T	T	S		S														T	T							S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.										.	.	.	.													.	.	.	.	.	.
Query SS confidence																	.	.	.	.										.	.	.	.													.	.	.	.	.	.
Query Sequence		P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	.	.	.	.	S	M	R	P	L	T	S	P	K	.	.	.	.	P	V	N	I	A	R	V	A	N	Y	P	P	.	.	.	.	.	.	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H
Query Conservation																	.	.	.	.										.	.	.	.													.	.	.	.	.	.
Alig confidence																	.	.	.	.										.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T	Y	G	M	T	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	S	G	K
Template Known Secondary structure			S		B																T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S													S							G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	.	.	.	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L
Query Conservation																																													.	.	.	.
Alig confidence											.	.														.																			.	.	.	.
Template Conservation											.	.														.
Template Sequence		M	D	I	V	L	A	Y	S	T	.	.	D	G	R	I	K	S	Y	G	L	K	M	L	K	.	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K	V	L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E	V	D	G	N	L	K	E
Template Known Secondary structure			S						T	T	.	.							T	T					B	.		T	T			S				B													S	T	T							T	T	T	T																T	S
Template Predicted Secondary structure											.	.														.
Template SS confidence
		191	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L	N	K	P	L	E	L	T	E	H	E	K	Q	W	I	K	Q	H	P	N	L	K
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.
Template Sequence		P	S	.	.	.	.	.	.	.	.	V	V	A	K	E	Y	L	E	K	H	R	Y	F	E
Template Known Secondary structure				.	.	.	.	.	.	.	.										T	G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.
Template SS confidence
		268	.									270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions