Job Description P30855 Confidence 86.81% Date Thu Jan 5 11:46:34 GMT 2012 Rank 409 Aligned Residues 173 % Identity 13% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																																.	.	.
Query SS confidence															.																																																																.	.	.
Query Sequence		I	N	A	D	Y	L	N	L	L	K	R	A	L	.	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	.	.	.
Query Conservation															.																																																																.	.	.
Alig confidence															.									.																									.	.	.	.																											.	.	.
Template Conservation																								.																									.	.	.	.
Template Sequence		I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	.	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	.	.	.	.	P	V	E	P	L	R	S	E	I	L	G	R	V	G	V	L	C	L	L	S	K	Q	H	P	L	A	N	Q	E
Template Known Secondary structure															T	T								.			G	G	G							T	S			S							S	S	.	.	.	.			T	T	S																T	T	S	G	G	G	S	S
Template Predicted Secondary structure																								.																									.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
			158	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.																.	.	.	.	.
Query SS confidence		.																.	.	.	.	.
Query Sequence		.	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	.	.	.	.	.	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V
Query Conservation		.																.	.	.	.	.
Alig confidence		.																.	.	.	.	.																																																			.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A	Y	L	V	A	E	R	Y	.	.	.	.	D	L	V	V	K
Template Known Secondary structure										S						S													T	S	S	S										S										T	T	S																			.	.	.	.	T
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280
		232	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure					.																		.	.	.	.	.	.
Query SS confidence					.																		.	.	.	.	.	.
Query Sequence		K	Y	Y	.	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	.	.	.	.	.	.	L	N	E	V	L	N	R	F	V	D	A	L
Query Conservation					.																		.	.	.	.	.	.
Alig confidence					.																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S	R	L
Template Known Secondary structure				S	S													G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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